SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31103

Length: 1349 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene31103 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperone clpb, putative n=1 Tax=Ricinus communis RepID=B9SJA7_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast organization	GO:0009658	Biological Process	90%
Blast2go	response to heat	GO:0009408	Biological Process	90%
Blast2go	binding	GO:0005488	Molecular Function	90%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Chaperonin ClpA/B	IPR001270	-	90%
Blast2go	AAA+ ATPase domain	IPR003593	-	90%
Blast2go	ATPase, AAA-2	IPR013093	-	90%
Blast2go	Clp ATPase, C-terminal	IPR019489	-	90%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8K5

Fln msg: Distance to subject end: 24 aas, your sequence is longer than subject: 405 - 292

Fln protein: MTHIQSIKEEIDRVNLEIQQAERDYDLNRAAELKYGSLMSLQKQLEGAEKELDEYQHSGKSMLREEVTGNDIAEIVSKWTGIPISKLQQSEKEKLLKLDVELHKRVIGQDPAVKSVAEAIQRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALASYLFNTDEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTESIRRRPYAVILFDEIEKAHTDAFNILLQILDDGRVTDSQGRTVSFTNTVIIMTSNIGSQYILSRLDDEPGSKEELYERMKNRVMEVAQTTFRPEFMNRIDEYIVFQPLDREQIKSIVRLQLDRVQQRLRDRKITLKVTDSGVELLGNMGYDPNYGARPVKRVIQQHIENELAKEILRGDIKEEDTVLVDTEMTAFANGQLPHQKL

Protein Length: 406

Fln nts: ATGGGGACTCTCTCTCACGAATGATACAGATAAGGCTTCAAAAGATAGGTTGACTCGTCTTGAAACAGAACTAGGTCTTTTGAAGCAAAGGCAGCAAGAGCTTACACAACAATGGGAACATGAAAAGGCTGTA_-_ATGACACACATTCAATCCATCAAGGAAGAGATTGATAGGGTAAATCTGGAAATACAACAAGCGGAGCGTGACTATGATCTGAACAGAGCAGCTGAATTGAAGTATGGAAGTCTTATGTCATTACAAAAGCAACTTGAGGGTGCTGAAAAGGAGTTGGATGAGTATCAGCATAGTGGGAAATCAATGTTAAGGGAAGAGGTAACTGGGAATGATATTGCTGAAATAGTCAGCAAATGGACCGGTATTCCCATATCCAAACTTCAGCAGTCTGAGAAAGAGAAGCTTTTGAAGTTGGATGTAGAATTGCATAAGCGTGTCATTGGTCAAGATCCAGCTGTGAAATCTGTAGCTGAAGCCATCCAGCGATCTAGGGCGGGTCTCTCAGATCCTAATCGTCCTATTGCAAGCTTCATGTTTATGGGCCCAACAGGTGTTGGCAAAACAGAATTAGCTAAGGCTCTTGCATCCTATTTATTTAATACTGATGAAGCTCTAGTGAGGATTGACATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGGCTGATTGGAGCACCACCAGGGTATGTGGGTTATGAAGAAGGGGGACAGTTGACTGAGTCTATACGTAGAAGGCCTTATGCAGTTATTCTGTTTGATGAAATTGAGAAGGCACATACAGATGCCTTCAATATTCTACTTCAGATTTTAGATGACGGAAGGGTCACTGATTCTCAGGGTCGAACTGTAAGCTTCACCAACACTGTCATTATTATGACTTCAAACATTGGTTCTCAGTACATTCTAAGTAGGCTTGATGATGAACCTGGCTCAAAAGAGGAACTGTATGAGAGAATGAAGAACAGGGTTATGGAAGTGGCTCAAACGACATTCCGCCCTGAGTTCATGAATCGCATTGATGAGTATATTGTTTTCCAACCTCTAGACCGTGAACAAATTAAGAGCATTGTAAGATTACAGCTGGATCGTGTTCAACAAAGGTTAAGAGACAGGAAAATCACCCTTAAAGTGACTGATAGTGGAGTGGAACTATTAGGTAATATGGGTTATGATCCAAATTATGGTGCAAGGCCAGTGAAAAGAGTAATTCAGCAGCATATAGAAAATGAACTAGCGAAGGAAATCCTCAGGGGTGATATCAAGGAAGAGGATACGGTTCTTGTGGATACAGAAATGACTGCATTTGCTAATGGTCAACTGCCCCATCAAAAGCTTG

Fln Alignment:

sp_v1.1_unigene31103___MFMGPTGVGKTELAKALASYLFNTDEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTESIRRRPYAVILFDEIEKAHTDAFNILLQILDDGRVTDSQGRTVSFTNTVIIMTSNIGSQYILSRLDDEPGSKEELYERMKNRVMEVAQTTFRPEFMNRIDEYIVFQPLDREQIKSIXXXXXXXXXXXXXXRKITLKVTDSGVELLGNMGYDPNYGARPVKRVIQQHIENELAKEILRGDIKEEDTVLVDTEMTAFANGQLPHQKL
D5A8K5_______________MFMGPTGVGKTELAKALASYLFNTDEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTECIRRRPYAVILFDEIEKAHTDAFNILLQILDDGRVTDSQGRTVSFTNTVIIMTSNIGSQYILSRLDDEPGSKEELYERMKNRVMEAAQMTFRPEFMNRIDEYIVFQPLDREQINSIVRLQLDRVQQRLRDRKITLKVTDSGVELLGSMGYDPNYGARPVKRVIQQHVENELAKEILRGDIKEEDTVLVDTEMTTFANGQLPYQKL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1055		20		80	0.995493
1214	66	33			0.997452
1215	66	33			0.997452
1216		33		66	0.997452
1217	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain