SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31087

Length: 1732 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene31087 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peptidylprolyl isomerase, putative (EC:5.2.1.8); K09571 FK506-binding protein 4/5 [EC:5.2.1.8]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	peptidylprolyl isomerase	-	-	82%

Source	ECs	Term	Type	e value	Identity
AutoFact	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	82%
Blast2go	response to heat	GO:0009408	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	vacuole	GO:0005773	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUZ0

Fln msg: your sequence is shorter than subject: 478 - 578

Fln protein: VVTLVVTMKKGERALFTIPPELAYGSSGVQPTIPPNATLQFDVELLSWAKIVDVCNDGGILKRIISEGEKYERPKDPDEVTVKYEAKLEDGTLVAKSPEEGVEFYVNDGHFCPAIAKAVKTMKRGESVILTIKPTYAFGEQGKDAEEGFAAIPPNATITTSLELVSFKAVKEVTEDKKVIKKILKEADGYDKPSDGTVVQIRYTAKLQDGTIFERKGYEGEEPFQFVVDEEQVIAGLDKAVETMKTGEIALITIGPEYGFGNIETQRDLAVIPPNSTLIYEVEMISFTKEKESWDMDTTEKIEASKQKKEQGNSLFKVGKYQRAAKKYEKAAKYIEHDSSFSAEEKKQSKVLKVSCNLNHAACCLKLKDFKKAVKLCSKVLEFESQNVKALYRRAQAYIETADLDLAEFDIKKALEIEPQNREVQLEYKILKQKQIEYNKKDAKLYGNMFAKLNKLEAFEGKKGKGEPMEVEKPTEN*

Protein Length: 479

Fln nts: CGTCGTGACCTTGGTTGTTACCATGAAGAAAGGAGAACGCGCACTATTCACAATACCTCCAGAATTGGCCTATGGTTCTTCTGGCGTACAACCCACTATACCTCCCAATGCCACCCTCCAATTTGATGTGGAATTACTTTCGTGGGCTAAGATTGTTGATGTATGCAATGATGGAGGCATTCTCAAGCGAATAATATCTGAAGGAGAAAAATATGAAAGACCCAAAGACCCAGATGAGGTGACTGTGAAATATGAAGCAAAGCTTGAGGATGGAACACTTGTGGCAAAATCCCCAGAAGAAGGCGTGGAGTTTTATGTCAATGATGGACACTTTTGTCCAGCTATTGCGAAGGCAGTCAAAACAATGAAGAGAGGAGAAAGTGTGATTCTCACCATAAAACCTACATATGCCTTTGGTGAACAGGGTAAGGATGCTGAAGAGGGGTTTGCTGCGATTCCTCCAAATGCTACTATCACTACAAGTTTGGAATTAGTTTCATTTAAAGCTGTTAAAGAAGTAACGGAAGATAAGAAGGTTATCAAGAAAATCCTGAAGGAAGCTGATGGCTATGATAAACCAAGTGACGGGACGGTAGTGCAGATCAGGTATACTGCTAAGCTGCAAGATGGAACAATCTTTGAGAGGAAGGGATATGAAGGCGAGGAGCCTTTCCAATTTGTAGTTGATGAAGAACAAGTCATTGCTGGTCTTGATAAGGCAGTGGAAACCATGAAGACAGGGGAGATTGCCCTGATTACAATAGGACCTGAATATGGTTTTGGAAATATTGAAACCCAGAGAGATCTGGCTGTAATTCCACCAAATTCAACTCTCATCTATGAGGTGGAAATGATATCATTTACTAAGGAAAAAGAATCGTGGGATATGGATACAACAGAGAAAATAGAGGCCTCTAAACAGAAGAAGGAGCAAGGAAATTCTCTGTTCAAGGTTGGAAAGTACCAGCGAGCTGCAAAGAAATATGAGAAGGCTGCAAAATATATTGAGCACGACAGTTCCTTCAGTGCTGAGGAGAAAAAGCAATCAAAGGTTTTGAAAGTATCGTGTAACCTGAATCATGCAGCATGCTGTCTTAAATTGAAAGACTTCAAGAAAGCAGTTAAACTATGTTCAAAGGTGTTAGAGTTCGAATCACAAAATGTGAAGGCATTGTATAGAAGAGCACAAGCATACATAGAGACAGCAGATTTGGATTTAGCTGAATTTGATATAAAGAAAGCTCTAGAGATAGAGCCACAAAATAGGGAAGTGCAACTGGAGTATAAAATTTTAAAGCAAAAGCAAATTGAATATAATAAGAAAGATGCAAAGCTATATGGAAACATGTTCGCAAAGCTGAACAAATTAGAAGCCTTTGAAGGAAAGAAGGGTAAAGGTGAACCGATGGAGGTGGAAAAGCCAACAGAAAATTGA___TGAAAACAGAAAGCCAGAGGCCATGGATATAGATTCTAGTTAAACGACAGCTTGTTAAATGTATTACATTTAGTTTTTAAAGAACTGTTAATGTGTAGGAAGTTACTTGCAAGAGGAAGAAGTGGCTATGTCATTGTTTTGGTGTTTTGACACTTGAACGACATCATGTTAATATATTACATTTAGTCTTCAGAGAACTGTAAATGTGTAGTAAAGCACTGCAAGAGGAAAAATTAGGGTGTGTCATTGTATTGGTGTTTTAATAATTGAAAAATGAGTAGTTTTGCATGTAAGGGT

Fln Alignment:

sp_v1.1_unigene31087___VVTMKKGERALFTIPPELAYGSSGVQPTIPPNATLQFDVELLSWAKIVDVCNDGGILKRIISEGEKYERPKDPDEVTVKYEAKLEDGTLVAKSPEEGVEFYVNDGHFCPAIAKAVKTMKRGESVILTIKPTYAFGEQGKDAEEGFAAIPPNATITTSLELVSFKAVKEVTEDKKVIKKILKEADGYDKPSDGTVVQIRYTAKLQDGTIFERKGYEGEEPFQFVVDEEQVIAGLDKAVETMKTGEIALITIGPEYGFGNIETQRDLAVIPPNSTLIYEVEMISFTKEKESWDMDTTEKIEASKQKKEQGNSLFKVGKYQRXXXXXXXXXXYIEHDSSFSAEEKKQSKVLKVSCNLNHAACCLKLKDFKKAVKLCSKVLEFESQNVKALYRRAQAYIETADLDLAEFDIKKALEIEPQNREVQLEYKILKQKQIEYNKKDAKLYGNMFAKLNKLEAFEGKKGKGEPMEVEKPTE
A9NUZ0_______________IATMKKGETAVFTIPPEMAYGESGSPPTIPPNATLKFDVELLSWASVKDICKDGGIFKKIIKEGEKWENPKEADEVLVKYEARLEDGTVVSKS-EEGVEFYVKDGYFCPAFAKAVKTMKKGEKVLLTVKPQYGFGHKGRQAIGNDVAVPPNATLMVDLELVSWKVVDEVTDDKKVLKKILKQGEGYERPNDGAVAKVKYTGKLEDGTVFEKKGSD-EEPFEFMTGEEQVVDGLDRAVMTMKKGEVALVTVAAEYGY-ETEIKTDLAVVPPKSTLIYDVELVSFVKEKESWDMSTAEKIEAAGKKKEEGNALFKVGKYFRASKKYKKAAKYIEYDTSFSEEEKKQSKPLKITCNLNNAACKLKLKDYTQAEKLCTKVLEIESQNVKALYRRAQSYIQTADLELAEIDIKKALEIDPNNRDVKLEYRALKEKQKEYNKKEAKFYGNMFARMSKLEELESRKSGSQKVETVDKVE

SNPs (tot: 68)

Position	A %	C %	G %	T %	Probability
641	90		10		0.90298
642		10		90	0.90298
643		10		90	0.90298
644	10			90	0.90298
646	90		10		0.90298
648	90			10	0.90298
651		10	90		0.90298
652		90	10		0.90298
654		10		90	0.90298
684	12			87	0.992554
685			12	87	0.992554
686		12		87	0.992554
690	87		12		0.992554
691	87		12		0.992554
692		87		12	0.992554
695	11			88	0.923564
696		11		88	0.923564
700		12		87	0.992554
707		14		85	0.993533
708		85		14	0.993533
709		14		85	0.993533
711	14	85			0.993533
811		11		88	0.991528
812		11	88		0.991528
831	87		12		0.992554
843		14		85	0.993533
844		85		14	0.993533
929	85	14			0.993533
930		14		85	0.993533
931		14		85	0.993533
933		85		14	0.993533
1010		22		77	0.999999
1024		11		88	0.991528
1039	87	12			0.992554
1102	14	85			0.993533
1156		85		14	0.993533
1157		85	14		0.993533
1158	14	85			0.993533
1161		85	14		0.993533
1164	16			83	0.994512
1165			16	83	0.994512
1166		16	83		0.994512
1167		16	83		0.994512
1168	16			83	0.994512
1169	16			83	0.994512
1170			16	83	0.994512
1171	83		16		0.994512
1176	83	16			0.994512
1178	16	83			0.994512
1180	83		16		0.994512
1381		20		80	0.995493
1414	80		20		0.995493
1553		12		87	0.999964
1554	87		12		0.999964
1615	81		18		0.999994
1617			27	72	1.0
1620		72	27		1.0
1624			20	80	0.999996
1626	80	20			0.999996
1629			20	80	0.999996
1630			20	80	0.999996
1631			80	20	0.999996
1632		20	80		0.999996
1634		22	77		0.999999
1636	22		77		0.999999
1637		22		77	0.999999
1734	75		25		0.99649
1738	75		25		0.99649

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain