SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene31001

Length: 1104 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene31001

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AT-P4H-1 n=2 Tax=Arabidopsis RepID=D7LJX6_ARALY	-	-	77%
FL-Next	tr=Putative prolyl 4-hydroxylase, alpha subunit; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	51%
Blast2go	prolyl 4-hydroxylase alpha	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Procollagen-proline dioxygenase.	EC:1.14.11.2	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Arginine and proline metabolism	00330		0.0	80%
Blast2go	Metabolic pathways	01100		0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	GO:0018401	Biological Process	0.0	80%
Blast2go	procollagen-proline 4-dioxygenase activity	GO:0004656	Molecular Function	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	80%
Blast2go	Prolyl 4-hydroxylase, alpha subunit	IPR006620	-	0.0	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1XG55

Fln msg: your sequence is shorter than subject: 205 - 302

Fln protein: RRDLGCHSIVLHNFLSAEECDYLIATARPRLQVSTVVDTKTGKGVKSNVRTSSGMFLNYEEKKYPMIQAIEKRISVYSQVPVENGELMQVLRYEEGEFYKSHHDYFSDEFNLKRSQRVATMLMYLSDDVEGGETHFPFAGDADCSCGGKRVMGICVKPIKGDAVLFWSVGLDGSVDPKSRHGGCEVLGGVKWSATKWMRQKSIA*

Protein Length: 206

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTACTCCACAATTTTTTGAGTGCTGAGGAGTGTGATTACCTGATTGCAACTGCTCGTCCCAGACTCCAAGTTTCTACTGTGGTGGACACTAAAACAGGCAAGGGTGTTAAAAGTAATGTTCGAACAAGTTCTGGGATGTTCTTAAATTACGAGGAGAAAAAGTATCCAATGATTCAGGCAATTGAGAAGCGCATTTCAGTTTATTCGCAAGTACCAGTAGAAAATGGAGAACTTATGCAGGTTCTACGGTATGAGGAAGGTGAATTTTATAAATCTCATCATGATTATTTCTCGGATGAGTTCAACTTGAAACGAAGCCAAAGAGTTGCAACAATGCTGATGTATCTCAGTGATGATGTAGAAGGGGGAGAAACACATTTTCCCTTTGCTGGAGATGCGGACTGTAGTTGTGGAGGCAAGAGGGTGATGGGAATTTGTGTGAAACCAATAAAAGGAGATGCGGTTCTTTTCTGGAGTGTGGGTCTAGATGGTTCAGTGGATCCGAAAAGTCGTCATGGAGGTTGTGAGGTGCTAGGGGGTGTTAAATGGTCGGCTACAAAATGGATGAGACAGAAAAGCATTGCCTGA___TGGTCCATGTATTATAGTCTATGTTAAATTAATTTATTGAAGTAGCACATCTATGGAGAGGTGTCGATGCTTAGCACATCACAAAGATGAATGATGCAAATCCTTTTAGATATTGATACAAAAGGCTGTGCAAATGCAATGCAATATATAGGAACGATGTTTTTCTGTGCAAAGTTCATTTTTGGATGAGATCAAAGTTTCAAGAGCTTAGTTGTGAAAGTTTGCCTCTTAAGATGTAATGGTCACGGGACAATGATTACGTCATTAACCCAATAGATGGTTGTAATGGTATATGGCACGAAGAATGAAGGGAGTAGTTATTGCAAGCATGGAAATTTAAGCTATTTTTCAATTGCTAGCCATGACATTGATGGCCGGTGGTGGCATGTCCTTGAGGTTAGCTGGTTGATTTCTAGAATGTCTTCCTCAATGGCATGAAATTATATCAAAGGCTAAATTCAAAAGTCTTTCTTGTGTAAAGATGCATTA

Fln Alignment:

sp_v1.1_unigene31001___SIVLHNFLSAEECDYLIATARPRLQVSTVVDTKTGKGVKSNVRTSSGMFLNYEEKKYPMIQAIEKRISVYSQVPVENGELMQVLRYEEGEFYKSHHDYFSDEFNLKRS-QRVATMLMYLSDDVEGGETHFPFAG---------DADCSCGGKRVMGICVKPIKGDAVLFWSVGLDGSVDPKSRHGGCEVLGGVKWSATKWMR
Q1XG55_______________AFLYHNFLAKDECEYLINIAKPHMVKSMVVDSKTGGSMDSNVRTSSGWFLNRGQDK--IIRRIEKRIADFSHIPVEHGEGLHVLHYEVEQKYDAHYDYFSDTINVKNGGQRGATMLMYLSDVEKGGETVFPQSKVNSSSVPWWDELSECGRS---GLSVRPKMGDALLFWSVKPDASLDPSSLHGSCPVIQGNKWSATKWMR

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
585	25		75		0.996473
609	83		16		0.994513
610	83		16		0.994513
611	83		16		0.994513
613	33	66			1.0
703	77		22		0.999999
706	77		22		0.999999
707		77		22	0.999999
708	66		22		0.999999
710	77	22			0.999999
711		22	77		0.999999
712	77			22	0.999999
715	75		25		1.0
716	75	25			1.0
725	66	33			1.0
728	40	60			1.0
796	83		16		0.994515
797	83			16	0.994515
798	83	16			0.994515
802		83	16		0.994515
805		20		80	0.995493
806		16		83	0.994523
811	80	20			0.995493
814	80			20	0.995493
815		20	80		0.995493
845	85	14			0.993535
849			14	85	0.993535
851		14	85		0.993533
852	14	85			0.993535
859	83		16		0.994512
861	83	16			0.994512
867	83	16			0.994512
868		16		83	0.994512
951		25		75	0.996473
1060	66		33		0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain