SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30999

Length: 359 nt

Origin of reads: Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene30999
GGTAATCAACGCAGAGTACTATTGGGGGACAACATGCCTTCTGTTATTGGGAGTATTGCGTGTGGTTCAGAAGCTGTACAAGCAGTACTACCATATCCAGAGGTGTCTGAGAGACATGCCTCCATTGTGCATAAAGATAATGCATTCTTTCTCACTGATATGGGCAGTCAATATGGTACCTTGATAATAGATAAAGAGGGTAGGAGGCATCATGTTCATTCCAACAAGAAAATCAGGATACATCCTGGTTATGTCATTCAATTTGGAACACACAAACAGGCTGCTTTACGGGTGAAGCTTTTTAAAACCCTGCGCAATGAAAATTCTATCGTACAAGATGCATAGTAATTGGATGTGCA

Ace file of the UniGene sp_v1.1_unigene30999 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zeaxanthin epoxidase, chloroplastic n=1 Tax=Zea mays RepID=B6U0L0_MAIZE	-	-	4.0e-16	43%
FL-Next	sp=Zeaxanthin epoxidase, chloroplastic; Nicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco).	-	-	0.0	46%
Blast2go	zeaxanthin epoxidase	-	-	3.69621e-16	63%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:1.14.13.9-	-	3.69621e-16	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	3.69621e-16	63%
Blast2go	abscisic acid biosynthetic process	GO:0009688	Biological Process	3.69621e-16	63%
Blast2go	zeaxanthin epoxidase [overall] activity	GO:0009540	Molecular Function	3.69621e-16	63%
Blast2go	cell part	GO:0044464	Cellular Component	3.69621e-16	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Forkhead-associated (FHA) domain	IPR000253	-	3.69621e-16	63%
Blast2go	SMAD/FHA domain	IPR008984	-	3.69621e-16	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q40412

Fln msg: your sequence is shorter than subject: 115 - 663

Fln protein: GNQRRVLLGDNMPSVIGSIACGSEAVQAVLPYPEVSERHASIVHKDNAFFLTDMGSQYGTLIIDKEGRRHHVHSNKKIRIHPGYVIQFGTHKQAALRVKLFKTLRNENSIVQDA*

Protein Length: 116

Fln nts: GGTAATCAACGCAGAGTACTATTGGGGGACAACATGCCTTCTGTTATTGGGAGTATTGCGTGTGGTTCAGAAGCTGTACAAGCAGTACTACCATATCCAGAGGTGTCTGAGAGACATGCCTCCATTGTGCATAAAGATAATGCATTCTTTCTCACTGATATGGGCAGTCAATATGGTACCTTGATAATAGATAAAGAGGGTAGGAGGCATCATGTTCATTCCAACAAGAAAATCAGGATACATCCTGGTTATGTCATTCAATTTGGAACACACAAACAGGCTGCTTTACGGGTGAAGCTTTTTAAAACCCTGCGCAATGAAAATTCTATCGTACAAGATGCATAG___TAATTGGATGTGCA

Fln Alignment:

sp_v1.1_unigene30999___DNMPSVIGSIACGS-EAVQAVLPYPEVSERHASIVHKDNAFFLTDMGSQYGTLIIDKEGRRHHVHSNKKIRIHPGYVIQFGTHKQAALRVKLFK
Q40412_______________ENMPCNIGSVSHANIPGKSVVIPLPQVSEMHARISYKGGAFFVTDLRSEHGTWITDNEGRRYRASPNFPTRFHPSDIIEFGSDKKAAFRVKVMK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
263		33	66		0.997452
264		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain