SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30973

Length: 1109 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene30973

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	protein kinase chloroplast	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	78%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	78%
Blast2go	Protein kinase-like domain	IPR011009	-	78%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	78%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: your sequence is shorter than subject: 283 - 431

Fln protein: GLVEHPNLVKLVGYCAEDDARGLQLLLVYEFMPNKSLEDHLFSKELPVLPWATRLKIALGAANGLANLHEELNIQIIFRDLKSSNILLDEDFNPKLSDFGLARLGPSGGFTHVSTALVGTAGYAAPEYIQTGHLSSKSDVWSFGVVLYELLTGRRAMDPRLPKNEQKLLEWVKPYISDSKKFRLILDPRLGGQYSLKEAHRIASLAHRCLVKQPKARPKMSELANELKNIAGASKSGSPQSVVLFSNAERDTEDFNEEPQKEPVSSKRPVFFLRSMINRISK*

Protein Length: 284

Fln nts: GGACTTGTTGAGCATCCTAATCTGGTGAAATTGGTTGGTTATTGTGCTGAAGATGATGCCAGAGGTCTTCAGCTGCTCTTGGTCTACGAGTTTATGCCTAATAAAAGCCTTGAGGACCACTTATTTAGTAAGGAATTACCTGTTCTCCCTTGGGCTACTAGATTAAAAATAGCCTTGGGTGCAGCTAATGGCTTGGCTAATCTGCACGAAGAATTGAATATCCAGATAATCTTTCGAGATTTGAAGTCATCCAATATACTTTTAGATGAAGACTTTAATCCGAAGTTGTCAGATTTTGGATTGGCTCGTCTAGGACCATCAGGGGGCTTCACCCATGTCTCAACAGCGCTTGTAGGCACTGCGGGATATGCAGCCCCAGAATATATACAAACTGGACATCTATCATCAAAGAGTGATGTTTGGAGCTTTGGAGTAGTGTTGTATGAACTACTTACGGGAAGAAGAGCCATGGATCCGAGACTTCCAAAGAATGAACAAAAGCTTCTTGAATGGGTAAAGCCATATATATCTGACAGTAAAAAGTTCCGTTTAATATTGGATCCAAGATTGGGGGGACAATATTCTCTCAAAGAAGCACACAGAATTGCTTCCCTGGCACATAGATGTTTGGTAAAGCAGCCCAAGGCCCGTCCTAAGATGAGCGAGCTGGCAAATGAACTCAAGAACATAGCGGGTGCCTCAAAATCAGGAAGCCCGCAATCTGTTGTTTTGTTTTCAAATGCTGAAAGAGACACTGAAGATTTCAACGAGGAACCTCAAAAAGAACCAGTCAGTTCAAAAAGGCCTGTTTTTTTCTTGAGAAGTATGATTAACCGTATAAGTAAGTAA___AATGGCCACCCTGCTAGGCAGGTTCAAATACCAAGGCCACTTGGGACGTTATCATCAGAGAATGGATTCTTAAGCCAGTCAGAACATTAGTCAATATTTTACAGTTTCTGGTAAGTGATGGTAAAATATACTCTTTTACAATAATGAGTCTTTCTGGCTGGTCTCTGTAAAGATCTGTATAAAAATTCCTTCCTTTATATATACTCAGTTTCCAGGACAACTAATGACACATAAAAGAAACACTCGTCTTTATTCAGGTA

Fln Alignment:

sp_v1.1_unigene30973___GLVEHPNLVKLVGYCAEDDARGLQLLLVYEFMPNKSLEDHLFSKELPVLPWATRLKIXXXXXXXXXXXHEELNIQIIFRDLKSSNILLDEDFNPKLSDFGLARLGPSGGFTHVSTALVGTAGYAAPEYIQTGHLSSKSDVWSFGVVLYELLTGRRAMDPRLPKNEQKLLEWVKPYISDSKKFRLILDPRLGGQYSLKEAHRIASLAHRCLVKQPKARPKMSELANELKNIAGASKSGS
B8LKY1_______________GQLRHANLVKLIGYCIEDNQR----LLVYEYMPRGSLENHLFRKGALPLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLLSLKDTAS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
855	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain