SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30951

Length: 1201 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene30951

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to CG10947-PA, isoform A isoform 2 [Canis familiaris]	-	-	3.0e-24	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	calmodulin-lysine n-methyltransferase-like	-	-	0.0	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMK5

Fln msg: Overlapping hits, possible frame ERROR between 230 and 97, your sequence is shorter than subject: 243 - 284

Fln protein: LIEYNISLGRTVNLMLLQRQQNHVDRRDLRFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGLSIAACTDAAEVVISDGNPQVVDYIQKNITANVGSFEDTKVTSLLLRWGQDVVCHVGHNFDLIIAADCTFFKEFHADLAYTLKSLLALCKASQAIFFSPKRGSTLDLFLRAVNSHGLHVKIHENYNSHVWGLHRKFIENDTCACAWPNYDEEHCYPLLVIISS*

Protein Length: 244

Fln nts: TGCTGATTGAATACAACATATCATTAGGCAGAACTGTTAATCTCATGTTGCTGCAAAGGCAACAAAATCATGTGGATCGAAGAGATTTGAGATTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCAGGACTGTCCATTGCAGCTTGCACAGATGCAGCAGAAGTAGTAATCTCAGATGGAAATCCTCAAGTTGTTGATTACATTCAGAAGAATATTACTGCCAATGTTGGCTCTTTTGAGGATACCAAAGTAACATCTTTGCTATTGCGTTGGGGCCAAGATGTGGTCTGTCACGTGGGCCACAATTTTGATTTAATTATTGCAGCTGATTGCACATTTTTCAAAGAATTCCATGCGGACCTTGCCTATACTCTGAAGAGTCTACTAGCATTGTGCAAGGCTTCCCAAGCCATTTTCTTCAGCCCAAAAAGAGGTTCAACGTTAGATTTATTTTTGCGGGCAGTTAACAGCCATGGCTTACATGTGAAGATCCATGAAAACTATAACAGCCATGTGTGGGGTCTACATAGGAAATTTATAGAAAATGACACTTGTGCTTGTGCTTGGCCCAACTATGATGAGGAGCATTGCTACCCCTTACTCGTAATAATCTCTTCCTAGCTTTTGTCTTCCAGCAAACCAAGCAAAGTAAAGCAATTTCAATAGTCCGCAGTGCAGAGAGGCAAATTGTGTGTTTTTTTGTTGTCAACTCCTAAGAGACGCTTTTCATTTCTCGTTCCAATTTATTTTCTTTAGTTTTTAACGCTAGCCAAATAGTCTCTGCACTTGAATTATTTGGCGAGGCCGCTGGAGAGAGTTGAGTCATTCAGAGCTTGGTTGGAATTTATTTTCATGAAGAATGTTGGTTAAAGCACAATGTTTGTTAAACCACCATTGAAGGATGGTTTGAGAAGTGCCTCTATGTATATATGATGATGTAGGGTTACCTTTTTATTAACATTGGTATTTTTTCTTACTTGATGTGACTTTATGGTGGCTATAACCAGCATAGATTGCATGGATCTATTTAAACTTTGGATTTGTTATCAACCATGTGGGGTAAAATTCTTAGAGATGCAAACTTTTCATCAAG

Fln Alignment:

sp_v1.1_unigene30951___LIEYNISLGRTVNLMLLQRQQNHVDRRDLRFART*NxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGLSIAACTDAAEVVISDGNPQVVDYIQKNITANVGSFEDTKVTSLLLRWGQDVVCHVGHNFDLIIAADCTFFKEFHADLAYTLKSLLALCKASQAIFFSPKRGSTLDLFLRAVNSHGLHVKIHENYNSHVWGLHRKFIENDTCACAWPNYDEEHCY
B8LMK5_______________LIEYNLSLGRTVSLMLLQRRQNHVDRRDFQICK---xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGLSIAACTDAAEVVISDGNPQVVEYIRKNISANVGSFEDTKVTSLLLRWGEDEVWHLGHSFDFILAADCTFFKEFHADLAHTLKTLLALCKASQAIFFSPRRGTTLDLFLQAITSLGLHVKITENYNSHVWDLHKKFMEQDNCSCAWPNYDEEHCY

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
777	88		11		0.923564
778			11	88	0.923564
779			11	88	0.923564
791		90		10	0.90298
792	90	10			0.90298
797	90	10			0.90298
798			90	10	0.90298
800	90			10	0.90298
803	90			10	0.90298
805			90	10	0.90298
809	90			10	0.90298
810	88	11			0.923564
811	11			88	0.923564
1173	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain