SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30892

Length: 1245 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene30892 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Photosystem II 22 kDa protein, chloroplastic n=7 Tax=Solanaceae RepID=PSBS_SOLLC	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	chloroplast chlorophyll a b-binding protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	nonphotochemical quenching	GO:0010196	Biological Process	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%
Blast2go	thylakoid	GO:0009579	Cellular Component	89%
Blast2go	membrane	GO:0016020	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chlorophyll a/b binding protein domain	IPR023329	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK12

Fln msg: Separated hits, possible frame ERROR between 309 and 315,

Fln protein: MAQSVLASRGVSSCVAGIGRFSQRPLPPPPALPVARGLRIRLPNASQRSWAPLTELQRANATGLNAGIAKTVALxxxQRKGSRPPKKGRAGRAAVPEEKPKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPTPPTGLGRAVIPPGKGFRSAVGLSESGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPITDIEPLVLFNVLFFLFAALNPGNGKFVTDVDEDEE*

Protein Length: 300

Fln nts: AATCACCCATCCAAAACATTACTCTGCAAATAAATAGACTATACGTCTCCCACTACACGGATCGGTGTCTCCATTAACACAACA_-_ATGGCGCAGTCCGTTCTCGCCTCTCGAGGTGTTAGCAGCTGTGTAGCAGGCATCGGACGGTTCAGTCAGAGGCCTCTGCCGCCTCCGCCCGCATTGCCCGTTGCCAGGGGGCTCAGGATTCGGCTGCCAAACGCCTCTCAGAGATCGTGGGCACCGTTGACAGAGCTACAGAGAGCCAATGCCACGGGACTGAACGCTGGAATTGCAAAGACGGTGGCGTTGTTxxxxxxCCAAAGAAAAGGCAGCCGCCCGCCCAAGAAGGGGAGGGCAGGTCGGGCGGCGGTGCCCGAGGAGAAGCCCAAGGTGGAGGACGGCATCTTCGGGACCTCCGGAGGGATCGGTTTCACCAAGGCCAACGAACTGTTCGTGGGCCGCGTCGCCATGATCGGTTTCGCTGCGTCGCTGCTGGGAGAAGCGATAACAGGGAAGGGAATTCTGTCGCAGCTAAATTTGGAGACAGGAATTCCTATATATGAGGCAGAGCCTCTGCTGCTCTTCTTTATTCTCTTCACGCTGCTGGGAGCCATCGGAGCTTTGGGCGACAGAGGGAAGTTTGTGGACGATCCGACTCCGCCTACGGGCCTGGGGAGGGCCGTTATACCGCCCGGAAAGGGCTTCAGATCCGCTGTGGGGCTCTCCGAAAGCGGGCCTCTGTTCGGGTTCACGAAAGCGAACGAGCTGTTCGTGGGGAGGTTGGCGCAGCTGGGAATCGCCTTCTCCATCATCGGGGAGATCATAACAGGGAAGGGAGCGCTGGCGCAGCTCAACATTGAGACGGGAGTTCCCATAACTGACATCGAACCCCTGGTGTTGTTCAACGTTTTGTTCTTCTTGTTTGCGGCATTGAATCCCGGAAACGGTAAATTCGTCACAGACGTAGATGAAGATGAAGAATGA___GAAGATCCATCAAAGAAACATGTGTTGCAAGGATTTCTAAATTTCTTTTAGATTTTCATTTGCTGTAAGGATGTTTGGTGAGAAAGATACAGACCACACAATCGATTTTCTTATCTTCAAAACCAATGACTGTACATCCTACGCAGATGAACATAAAGTGTCCACAACGAGTTATATGTCACCACAGAGGGAGCACATCACTCCCGTGAAAAGGTTCATAACACTTGAATTTCCTTTTAATACAATAAAAGTTGAATTTTCCCCT

Fln Alignment:

sp_v1.1_unigene30892___MAQSVLASRGVSSCVAGIGRFSQRXXXXXXXXPVARGLRIRLPNASQRSWAPLTELQRANATGLNAGIAKTVALFxxQRKGSRPPKKGRAGRAAVPEEKPKVEDXXXXXXXXXXXTKANELFVGRVAMIGFAASLLGEAITGKGILSQLNLETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGKFVDDPTPPTGLGRAVIPPGKGFRSAVGLSESGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPITDIEPXXXXXXXXXXXXXXNPGNGKFVT
A9NK12_______________MAQSVLASGGLSSCVAGIAGFNQRPLPSPPALPVARGLRIRPPNAAQISWSPLTELPSANAAGLNARIARTEALFxxKEKAAAPPKKGRTGRVALPEEKPKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDQTPTTGLEKAVIPPGKGFRSAVGLNESGPLFGFTKSNELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPVSEIEPLVLFNVAFFLFAALNPGNGKFVT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
36	85		14		0.993533
268		87	12		0.992554
510	88	11			0.991528
511	88	11			0.991528
514			88	11	0.991528
695	83	16			0.994512
696		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain