SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30859

Length: 419 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene30859
GCTTTATCTTCCTGAGCCGAAAGAAAAGGCAAGCGAGAATCGAAGCCGCGGACATCGGCAGCAACGACAGCTTCACAAACGAAGAAACCAACAACCACCTCCTCCCGATGGTGCTGCAACACATGGGATCCCTCTCCTCCTCTCCCATGACCCTCTTCTCCTACGACGAGCTCCGGAGCGCCACCGACTCTTTCTCCGAGCACCGGCTGCTGGGCAACGGGGGTTACGGCACAGTATACGAGGCCAAGTTCTCCGACGGCGGCGTGGCGGCGGTGAAGATTCTCAACTACCAAAACAACAGGCGCTTCGAGCAATTCTACAACGAGGTCAGAATCCTGGCCAAGGCCCGCCACCCCAACCTGGTGGAGCTCCAGGGCTTCTGCCTCGAAGGACGCGACCTCATTCTCGTCTACGAGCTT

Ace file of the UniGene sp_v1.1_unigene30859

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0689900 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5N7Q8_ORYSJ	-	-	7.0e-19	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	wall-associated kinase 4-like	-	-	1.86361e-23	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA69

Fln msg: Distance to subject end: 249 aas, your sequence is shorter than subject: 139 - 587

Fln protein: FIFLSRKKRQARIEAADIGSNDSFTNEETNNHLLPMVLQHMGSLSSSPMTLFSYDELRSATDSFSEHRLLGNGGYGTVYEAKFSDGGVAAVKILNYQNNRRFEQFYNEVRILAKARHPNLVELQGFCLEGRDLILVYEL

Protein Length: 140

Fln nts: GCTTTATCTTCCTGAGCCGAAAGAAAAGGCAAGCGAGAATCGAAGCCGCGGACATCGGCAGCAACGACAGCTTCACAAACGAAGAAACCAACAACCACCTCCTCCCGATGGTGCTGCAACACATGGGATCCCTCTCCTCCTCTCCCATGACCCTCTTCTCCTACGACGAGCTCCGGAGCGCCACCGACTCTTTCTCCGAGCACCGGCTGCTGGGCAACGGGGGTTACGGCACAGTATACGAGGCCAAGTTCTCCGACGGCGGCGTGGCGGCGGTGAAGATTCTCAACTACCAAAACAACAGGCGCTTCGAGCAATTCTACAACGAGGTCAGAATCCTGGCCAAGGCCCGCCACCCCAACCTGGTGGAGCTCCAGGGCTTCTGCCTCGAAGGACGCGACCTCATTCTCGTCTACGAGCTT

Fln Alignment:

sp_v1.1_unigene30859___YDELRSATDSFSEHRLLGNGGYGTVYEAKFSDGGVAAVKILNYQNNRRFEQFYNEVRILAKARHPNLVELQGFCLEGRDLILVYEL
D5AA69_______________YSVLQAATNNFSSYNFLGKGGFGSVYRAQFHDDFCVAVKMLDENRKQADNEFQSEVELMSKIRHPNLVSLLGFCVHGKTRLLVYEL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
221	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain