SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30842

Length: 1884 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene30842

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aldose 1-epimerase, putative n=2 Tax=Ricinus communis RepID=B9S660_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	aldose 1-epimerase family protein	-	-	83%

Source	InterPros	Term	Type	Identity
Blast2go	Aldose 1-/Glucose-6-phosphate 1-epimerase	IPR008183	-	83%
Blast2go	Glycoside hydrolase-type carbohydrate-binding	IPR011013	-	83%
Blast2go	Glycoside hydrolase-type carbohydrate-binding, subgroup	IPR014718	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSD2

Fln msg:

Fln protein: MLVDLVKDSSGLERVKLTEPRGSSVQVLLYGGQVISWKNEREEELLFVSNKALFKPPKAIRGGIPICFPQFGSFGSLEEHGFARNRLWAIDSCPSPLPAANNVSTVDLILTPTEEDLKMWSRSFELRLRVSLGPGKLTLIPRVRNVDTKPFSFTLALHTYLSVSDISEVRVEGLETLDYFDNLHQKERFTEQADAITFDDEVDRVYLSTPTKIAVIDHEKKRTFELRKEGLPDAVVWNPWDKKAKAIPDFGDEEYKQMVCIAAAAIEHPIMLKPREEWKGRQELSTVSSSYFSGQLDPLRVLHG*

Protein Length: 306

Fln nts: TTATTTTTTGTTTATTTGGAGAATTCAATTTGTCCTAAGTGGAGACAATGTTCGACGAAAGCTGGAGAGAATTTTTATTTCTGCGAACTTCGTTGTTTCTACCACAATAATAAATATGCTGAAGTTTTAAGGCACTTTGGTCGAAGTTCGCCTATAATATTGTCCGCTAGAGAGATACGGTTAATATTGGATAATTTTGGTCTTGTCCGATTATTCTGTCAAAATAATGGATATCTTAAGAGTTTCCTACTAGTTTGGACGTAATTTGCCCAGAAGATTTGTCTTTTCTATTTAACATTTGGCTAAATTTCCGGTAAATGCGGAAAAAATGGAGTTTGAAGAAATCTCGCAACCATAGCTACCACGGGGTTCAAGTTGAAAGTCCCTTTCCCAAGGAGGGACAAA_-_ATGTTGGTCGATCTTGTCAAGGATTCCAGTGGACTGGAGAGGGTAAAATTGACGGAACCTCGGGGATCCTCTGTTCAGGTGCTTTTATATGGGGGACAAGTTATATCATGGAAAAATGAACGTGAAGAAGAACTGCTGTTTGTGAGCAACAAGGCCCTTTTTAAGCCACCAAAAGCAATCAGAGGAGGGATACCCATTTGCTTTCCTCAGTTTGGTAGTTTTGGATCGTTGGAAGAGCATGGCTTTGCAAGGAACAGGTTGTGGGCAATTGATAGCTGCCCTTCACCATTGCCGGCTGCAAATAATGTGTCAACTGTTGACCTTATTTTGACTCCGACAGAGGAAGATTTGAAGATGTGGTCTCGCAGTTTTGAACTCCGGCTACGGGTGTCTCTAGGTCCTGGGAAGCTGACATTGATTCCTCGTGTGAGGAATGTTGATACTAAGCCTTTCTCTTTCACGCTTGCCCTGCATACTTACTTATCAGTCTCAGACATAAGTGAAGTGCGAGTGGAGGGTTTGGAAACTCTTGACTATTTTGACAATTTACATCAGAAGGAACGATTTACAGAGCAAGCTGATGCTATTACTTTTGATGACGAGGTGGATAGGGTGTATCTGAGTACTCCAACTAAGATTGCAGTCATTGATCACGAAAAGAAAAGGACGTTTGAATTGAGGAAAGAGGGTCTGCCTGATGCAGTTGTTTGGAACCCATGGGATAAGAAGGCCAAAGCCATTCCTGATTTTGGTGATGAAGAGTACAAACAGATGGTTTGTATTGCAGCAGCGGCAATTGAGCACCCTATAATGTTAAAGCCACGTGAGGAGTGGAAAGGGCGCCAAGAACTATCCACTGTTTCATCGAGTTACTTCAGTGGACAATTAGATCCATTGAGAGTTCTTCATGGTTGA___TTCTCTCAATGTGTGTTCGTGCTGGTTCATTGTGGTGGGCATAAGATTAAGTTTGTCTAACAAATGTTCTAGCAAGTAAGATTACGTTGTTTATTGGTGGAAGACTCTTATCACTGTTTATGTCCTTACACAGTATCTGTTCTGAGCTCTATCGTAGGTTGTAAAAATATACTTGTTCATATCTACCTGTCTGGTACAATGGTCACCAACACATGTTTAGTAAATTGCTTCATGCTGCAGTGCCACAAGAGTTCACCAGCTGCTCAAGTTTCTGAACTCATTGCCAACTATGCTACATGCTTAAGTTAGTGCATTGTGGCTTGGAAAATCAGCATAGCAATTAGAAATCAAATCTTGTTTGTCAAGCGTGGGTTGGCTTCAACTATTTATGGAGTGCCATATACCCAATACCAAGCCAGTAGATTGCAGAAAATAACTCTATTTTTCTGCAATAGTAAGAGAATGCCATATACTTTTACTGCATTAGCTGTCTGGTTGTATCTTGTAATAATTCATGATGCCATAATTTAAATGTGTTGTTATCTTTGCTTGTATTGACATTAA

Fln Alignment:

sp_v1.1_unigene30842___MLVDLVKDSSGLERVKLTEPRGSSVQVLLYGGQVISWKNEREEELLFVSNKALFKPPKAIRGGIPICFPQFGSFGSLEEHGFARNRLWAIDSCPSPLPAANNVSTVDLILTPTEEDLKMWSRSFELRLRVSLGPGKLTLIPRVRNVDTKPFSFTLALHTYLSVSDISEVRVEGLETLDYFDNLHQKERFTEQADAITFDDEVDRVYLSTPTKIAVIDHEKKRTFELRKEGLPDAVVWNPWDKKAKAIPDFGDEEYKQMVCIAAAAIEHPIMLKPREEWKGRQELSTVSSSYFSGQLDPLRVLHG
C0PSD2_______________MMVDLVRDSSGLEKVILTEPRGSSAQVLLYGGQVISWKNERGEELLFLSNKALFKPPKAIRGGIPICFPQFGSFGSLEQHGFARNRLWAIDTCPSPLPAANNTSTIDLILIPTEEDLKIWSRSFELRLRVSLGPGKLTLIPRVRNIDNKPFSFTFALHTYLSVSDISEVRVEGLETLDYFDNLLQKERFTEQADAITFDDEVDRVYLSTPTKIAVIDHEKKRTFELRKEGLPDAVVWNPWDKKAKAIPDFGDEEYKQMVCIEAAAIEHPIMIRPREEWKGRQELSTVSSSYFSGQLDPLRVLHG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
467	14	85			0.993533
470	12	75	12		0.975346
471			87	12	0.992554
1891			12	87	0.992554
1896		16		83	0.994512
1899		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain