SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30820

Length: 280 nt

UniGene Fasta

>sp_v1.1_unigene30820
CGTCGTGACCTTGGCTGTCACTCAGTTTTGATCCAAATACTAGGCATTGCTTATATGGGTTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCATGAGGTGCACTTCTCTATTTTGAGAGAGATTGTGTCTATGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGATTGGTCATTTAGCAGCTGCATGTGAAGGACAGCCAAAAAAGAAAGCATGGAGATCTTGATGAGAAAGGTGATGAACTTAATGTTCCTAAAAAGCCTTATCAGTTTG

Ace file of the UniGene sp_v1.1_unigene30820

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	5'->3' exoribonuclease, putative; K12619 5'-3' exoribonuclease 2 [EC:3.1.13.-]	-	-	5.0e-32	84%
FL-Next	Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3	-	-	0.0	77%
Blast2go	5 -	-	-	1.25873e-32	92%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on ester bonds, Exoribonucleases producing 5'-phosphomonoesters.	EC:3.1.13.-	-	5.0e-32	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	miRNA catabolic process	GO:0010587	Biological Process	1.25873e-32	92%
Blast2go	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	1.25873e-32	92%
Blast2go	nucleus	GO:0005634	Cellular Component	1.25873e-32	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, CCHC-type	IPR001878	-	1.25873e-32	92%
Blast2go	Zinc finger, CCHC retroviral-type	IPR013084	-	1.25873e-32	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FQ03-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 458 aas, your sequence is shorter than subject: 77 - 763

Fln protein: S*PWLSLSFDPNTRHCLYGLDADLIMLALSTHEVHFSILREIVSMPGQQDKCFLCGQIGHLAAACEGQPKKKAWRS*

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTGATCCAAATACTAGGCATTGCTTATATGGGTTGGATGCTGATCTAATCATGTTAGCATTGTCTACTCATGAGGTGCACTTCTCTATTTTGAGAGAGATTGTGTCTATGCCTGGGCAACAAGACAAATGCTTCCTTTGTGGTCAGATTGGTCATTTAGCAGCTGCATGTGAAGGACAGCCAAAAAAGAAAGCATGGAGATCTTGATGAGAAAGGTGATGAACTTAATGTTCCTAAAAAGCCTTATCAGTTTG

Fln Alignment:

sp_v1.1_unigene30820___FDPNTRHCLYGLDADLIMLALSTHEVHFSILREIVSMPGQQDKCFLCGQIGHLAAACEGQPKKKAWRS
Q9FQ03-2_____________FDPNTRHCLYGLDADLIMLGLATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain