SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30813

Length: 526 nt

Origin of reads: Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene30813
CGTCGTGACCTTGGCTGTCACTCAGGCCACAAAGTTTAAATACCTGGTGTCTATCATCGTTTCCGGTCTTCAATACTCCTCATTGGTATAAATAATAACGTCGTGGTTTTGTATGTGAGGTATTCCATGGGTGGAAATCAATGTCCTATTTGCTTGGAGCCTATAACAGCGGATGCATTTTTGGATCAATGTTTTCATAAGTTCTGCTATCATTGTATACTACAGTGGTCTGAAGTGCTTTCCAACCAACAACATAAGACCTTTTCACATCTGCCTTGCCCTCTTTGCAAGATGCAGAATACCTCAATAATACATAATTTTATTGGTCCTACATTTCAACGCCACTATGTCTCAAAGTTGCCTGCAAAGAGCTTTGTCTTGTCAGAAGCACACATTTGCAGATTAAAGGTCTATTCTGAGCCTCCAGATGTTGCAGTTAGCAATAATCAAGCTTTGGGACACTGGAAACAGCATGGGAATCTGCCAAGTAGTCGTTGGTTGCTAATGTTGGATACACCGAGAGCTT

Ace file of the UniGene sp_v1.1_unigene30813

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] dbj\|BAC42417.1\| unknown protein [Arabidopsis thaliana] gb\|AAP68217.1\| At3g05250 [Arabidopsis thaliana] gb\|AAZ14063.1\| At3g05250 [Arabidopsis thaliana]	-	-	5.0e-20	40%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	42%
Blast2go	protein binding	-	-	5.40076e-27	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	5.40076e-27	62%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	5.40076e-27	62%
Blast2go	Zinc finger, RING-type, conserved site	IPR017907	-	5.40076e-27	62%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	5.40076e-27	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6HYY8

Fln msg: Distance to subject end: 123 aas, your sequence is shorter than subject: 133 - 280

Fln protein: MGGNQCPICLEPITADAFLDQCFHKFCYHCILQWSEVLSNQQHKTFSHLPCPLCKMQNTSIIHNFIGPTFQRHYVSKLPAKSFVLSEAHICRLKVYSEPPDVAVSNNQALGHWKQHGNLPSSRWLLMLDTPRA

Protein Length: 134

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCCACAAAGTTTAAATACCTGGTGTCTATCATCGTTTCCGGTCTTCAATACTCCTCATTGGTATAAATAATAACGTCGTGGTTTTGTATGTGAGGTATTCC_-_ATGGGTGGAAATCAATGTCCTATTTGCTTGGAGCCTATAACAGCGGATGCATTTTTGGATCAATGTTTTCATAAGTTCTGCTATCATTGTATACTACAGTGGTCTGAAGTGCTTTCCAACCAACAACATAAGACCTTTTCACATCTGCCTTGCCCTCTTTGCAAGATGCAGAATACCTCAATAATACATAATTTTATTGGTCCTACATTTCAACGCCACTATGTCTCAAAGTTGCCTGCAAAGAGCTTTGTCTTGTCAGAAGCACACATTTGCAGATTAAAGGTCTATTCTGAGCCTCCAGATGTTGCAGTTAGCAATAATCAAGCTTTGGGACACTGGAAACAGCATGGGAATCTGCCAAGTAGTCGTTGGTTGCTAATGTTGGATACACCGAGAGCTT

Fln Alignment:

sp_v1.1_unigene30813___SMGGNQCPICLEPITADAFLDQCFHKFCYHCILQWSEVLSNQQHKTFSHLPCPLCKMQNTSIIHNFIGPTFQRHYVSKLPAKSFVLSEAHICRLKVYSEPPDVAVSNNQALGHWKQHGNLPSSRWL
F6HYY8_______________SEGPNPCPICLGPVVKDSYLDQCFHKFCYDCIVRWTKVVASKHCRLSSTIKCPFCKTENFSIVHGYDGSSFQQHYINQDFGKSFSFSKAHKYRLQCYYTEPGILNDKFNVSRYWKFHKYRQPNQWL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
443		66		33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain