SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30782

Length: 398 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene30782
TGATAACCAGCTTTTTGTATGGAACCAACAATCTCAACAACCAGTGCTGAAATATAATGAGCACACAGCTGCTGTAAAGGCCATTGCCTGGTCTCCCCATCAGCATGGTCTTCTTGCTTCTGGAGGTGGAACAGCAGATCGCTGCATTCGTTTCTGGAACACAGCAACCAATACTTCCTTAAATTGTGTGGATACTGGTAGTCAGGTTTGTAACCTTGTATGGTCTAAGAATGTCAATGAGCTTGTGAGCACCCATGGTTATTCTCAGAACCAAATTATTGTGTGGCGATACCCAACTATGTCGAAACTTGCGACTCTAACAGGCCACACCCTCAGAGTGCTTTATCTTGCAATTTCTCCTGATGGGCAGACTATTGTAACGGGTGCAGGTGATGAAA

Ace file of the UniGene sp_v1.1_unigene30782

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative; K03364 cell division cycle 20-like protein 1, cofactor of APC complex	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	94%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	94%
Blast2go	Quinonprotein alcohol dehydrogenase-like	IPR011047	-	94%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	94%
Blast2go	WD40-repeat-containing domain	IPR017986	-	94%
Blast2go	WD40 repeat, conserved site	IPR019775	-	94%
Blast2go	WD40 repeat, subgroup	IPR019781	-	94%
Blast2go	WD40 repeat 2	IPR019782	-	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPX8

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 132 - 508

Fln protein: DNQLFVWNQQSQQPVLKYNEHTAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTATNTSLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTLRVLYLAISPDGQTIVTGAGDE

Protein Length: 133

Fln nts: TGATAACCAGCTTTTTGTATGGAACCAACAATCTCAACAACCAGTGCTGAAATATAATGAGCACACAGCTGCTGTAAAGGCCATTGCCTGGTCTCCCCATCAGCATGGTCTTCTTGCTTCTGGAGGTGGAACAGCAGATCGCTGCATTCGTTTCTGGAACACAGCAACCAATACTTCCTTAAATTGTGTGGATACTGGTAGTCAGGTTTGTAACCTTGTATGGTCTAAGAATGTCAATGAGCTTGTGAGCACCCATGGTTATTCTCAGAACCAAATTATTGTGTGGCGATACCCAACTATGTCGAAACTTGCGACTCTAACAGGCCACACCCTCAGAGTGCTTTATCTTGCAATTTCTCCTGATGGGCAGACTATTGTAACGGGTGCAGGTGATGAAA

Fln Alignment:

sp_v1.1_unigene30782___DNQLFVWNQQSQQPVLKYNEHTAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTATNTSLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTLRVLYLAISPDGQTIVTGAGDE
B8LPX8_______________DNQLLVWNQQSSQPLLRFNEHTAAVKAIAWSPHQHGILASGGGTADRCLRFWNTATDTRLNCVDTGSQVCNLVWCKNVNELVSTHGYSQNQIMVWRYPSMSKLATLTGHTLRVLYLAISPDGQTIVTGAGDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain