SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30781

Length: 1252 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene30781

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TATA-box binding protein, component of TFIID and TFIIIB n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJY7_PHYPA	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	tata-box binding component of tfiid and tfiiib	-	-	93%

Source	InterPros	Term	Type	Identity
Blast2go	TATA-box binding protein	IPR000814	-	93%
Blast2go	Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal	IPR012294	-	93%
Blast2go	Beta2-adaptin/TBP, C-terminal domain	IPR012295	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRB0

Fln msg:

Fln protein: MEDQGLQGVLEGSQPVDLEKHPSGLVPILQNVVSTVDMGCRLDLKEIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKCEQHSKLAARKYARIIQKLGFPAQFKEFKIQNVVASCDVKFPIRLEGLAFSHGHFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDQIYEAFENIYPVLTEFRKIQQ*

Protein Length: 206

Fln nts: CCCATCTTTGTGTATTTATGCTctTcGAtgAcCatGGtgGTCgaTCaAGTTTGAGGATTGTTCGTTAGGCGTTCTTTTCTGCGCATGTATATATACACACAGCTTCATATATTTCGTTTCAGGACAAGGTGAATTCTTCACCCAACGACAGGTGCAGTTCAGTACAATGATATAGGAATTGGGTTGTGTGGAGAAGGTTGGCTGCTTTACGTTTGAGCGGAATTGATTTGGAAAAAATAACAT_-_ATGGAGGATCAGGGACTTCAGGGTGTTCTTGAAGGTAGCCAACCTGTGGATCTTGAGAAGCATCCCTCTGGATTAGTTCCAATCTTGCAGAATGTAGTTTCAACAGTCGATATGGGTTGCCGGCTGGATTTGAAAGAAATTGCTCTTCATGCTCGCAATGCAGAATATAACCCCAAGCGGTTTGCTGCTGTCATAATGAGGATAAGAGAGCCTAAGACAACTGCTTTGATATTTGCCTCTGGAAAGATGGTGTGTACTGGTGCTAAGTGTGAGCAGCATTCCAAGCTTGCAGCAAGAAAGTATGCACGTATTATCCAGAAACTTGGCTTTCCTGCTCAGTTCAAGGAGTTCAAGATTCAAAATGTTGTTGCCTCGTGTGATGTCAAGTTTCCAATCAGACTGGAAGGGCTTGCTTTTTCTCATGGTCACTTTTCGAGTTATGAGCCTGAGCTCTTTCCTGGTCTGATTTATCGGATGAAACAACCAAAGATCGTGTTGCTAATTTTTGTCTCAGGAAAGATTGTCCTAACTGGTGCAAAGGTTAGGGATCAGATATATGAGGCCTTTGAGAACATCTATCCTGTGCTTACGGAGTTCCGAAAGATTCAGCAATAA___ATCAGCTTTTAGGGCCTTGGCCAGCTTGGTCTCATTTCCTTATTTTAGTCTCTTTTCTTTTTGGAATATTATTCTATGCGCAAATTTCACTGGAACAGTGAAGTAGCAATTTGTACGAGGCATTGCTGATGTCAATAACGATTACCAGGTATATGAATGATGAATGTTGGATGTTGGATGTTGGCTCCACATGTAGCCTTCAATTATCACTTGTGCCATACCATTGTAGGTGTTTTTTGACAACTTCATTGTTTGTCATTCATCTCCAGTTAAGTAATAATTCAGTATTTTCTGTgCTTGTTAGGTGCAATCTTGCACTTCGGCAAATATAACTATAAAAGACATcTAATTTTTAATTATCCTACAGAAGGTTAATATTAGTCTTATTGTTGTT

Fln Alignment:

sp_v1.1_unigene30781___VLEGSQPVDLEKHPSGLVPILQNVVSTVDMGCRLDLKEIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKCEQHSKLAARKYARIIQKLGFPAQFKEFKIQNVVASCDVKFPIRLEGLAFSHGHFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDQIYEAFENIYPVLTEFRK
C0PRB0_______________VLEGSQPVDLEKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAHFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
416	72		18	9	0.999997
618		11		88	0.923564
621		11		88	0.923564
625			11	88	0.923564
626	11		88		0.923564
630		88		11	0.923564
637		12	87		0.992554
640		12	87		0.992554
642	14	14			0.984337
643	14	85			0.993533
662		11	88		0.923564
664		11	88		0.923564
667	77			22	0.999999
668		12	87		0.992554
669	25		75		1.0
670		12	87		0.992554
672			20	80	0.999996
674		20	10		0.999999
677		80	20		0.999996
678	22			77	0.999999
679		22	11	66	0.999999
680		25		75	1.0
681		14		85	0.993533
682	12			87	0.992555
683		71	28		1.0
684			25	75	1.0
701	77	22			0.999999
704			22	77	0.999999
707		22		77	0.999999
708			77	22	0.999999
709	75			25	1.0
711		75	25		1.0
715	75			25	1.0
716		25	75		1.0
717	25	75			1.0
718		25		12	1.0
964		88		11	0.924009
1006	10	90			0.90298
1060		11	88		0.923564
1187		60	40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain