SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30742

Length: 571 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene30742
AGGACGCCCGCGCTAATGTGACAGTTGAAATAAATGGAGATGTCATTGGATCAAATGAGGGTGCAAGCGCTTTCAGATCTTATCCAAAGGGAATAAGGGATCTGATAAATTATACGAAGCATCGTTATAACAATCCTCCCATTTACATCACAGAGACTGGGTATGCGGATTTTGACAATGGCACAACCCCACTGAAAAAAGCGTTACAGGATTCGAAGCGAGTGAAGTACCATTATCAACATCTATCAAAATTACTGGAAGCCATAAGGGAAGGCGCTGATGTCCGAGGTTATATTGTGTGGGCGCTGCTGGACAATTTCGAATGGGCTAGTGGATATAATGTCCGATTTGGTTTAAATTATGTGGATTACAGGCACAATTTAAAGCGATATGCGAGGGCATCTGCATATTGGTTTAAACACTTACTCAGGATTTAAAATACTTGTGCCTTAAATTTGGATTAAAAAATCAGAAATAAATCTCCATGTAAGCTGCCAAAGCTTGGCATATCTTTATGCCTAATTGGCATCTTATGTTTCATTTAAAATATCTGTTGTAATTAAATGCTTGA

Ace file of the UniGene sp_v1.1_unigene30742 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9RI70_RICCO	-	-	6.00036e-42	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	coniferrin beta glucosidase	-	-	0.0	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ52

Fln msg: your sequence is shorter than subject: 145 - 407

Fln protein: DARANVTVEINGDVIGSNEGASAFRSYPKGIRDLINYTKHRYNNPPIYITETGYADFDNGTTPLKKALQDSKRVKYHYQHLSKLLEAIREGADVRGYIVWALLDNFEWASGYNVRFGLNYVDYRHNLKRYARASAYWFKHLLRI*

Protein Length: 146

Fln nts: AGGACGCCCGCGCTAATGTGACAGTTGAAATAAATGGAGATGTCATTGGATCAAATGAGGGTGCAAGCGCTTTCAGATCTTATCCAAAGGGAATAAGGGATCTGATAAATTATACGAAGCATCGTTATAACAATCCTCCCATTTACATCACAGAGACTGGGTATGCGGATTTTGACAATGGCACAACCCCACTGAAAAAAGCGTTACAGGATTCGAAGCGAGTGAAGTACCATTATCAACATCTATCAAAATTACTGGAAGCCATAAGGGAAGGCGCTGATGTCCGAGGTTATATTGTGTGGGCGCTGCTGGACAATTTCGAATGGGCTAGTGGATATAATGTCCGATTTGGTTTAAATTATGTGGATTACAGGCACAATTTAAAGCGATATGCGAGGGCATCTGCATATTGGTTTAAACACTTACTCAGGATTTAA___AATACTTGTGCCTTAAATTTGGATTAAAAAATCAGAAATAAATCTCCATGTAAGCTGCCAAAGCTTGGCATATCTTTATGCCTAATTGGCATCTTATGTTTCATTTAAAATATCTGTTGTAATTAAATGCTTGA

Fln Alignment:

sp_v1.1_unigene30742___DARANVTVEINGDVIGSNEGASAFRSYPKGIRDLINYTKHRYNNPPIYITETGYADFDNGTTPLKKALQDSKRVKYHYQHLSKLLEAIREGADVRGYIVWALLDNFEWASGYNVRFGLNYVDYRHNLKRYARASAYWFKHLLR
B8LQ52_______________DARANLSYQVNGIYIGSDEGVSDFRSYPAGLRYALSCIKHRYNNPPIYITETGYVDFDNGTTPLEQALNDSKRVKYHSEHLSYLLKAIREGADVRGYLVWSLLDSFEWSSGYNYRFGLYHVDYKDNLKRHPKTSAHWFKHILQ

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
245	50		50		1.0
246	50	50			1.0
313		50		50	1.0
321	50		25	25	0.995539
322			50	50	1.0
336		50	50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain