SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30709

Length: 1670 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene30709

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aig1, putative n=1 Tax=Ricinus communis RepID=B9R8X8_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	avirulence-responsive avirulence induced gene aig	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AIG1	IPR006703	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPY9

Fln msg:

Fln protein: MEGPRMGRSKINEMDDWELAGPATGVTTLVLVGRTGNGKSATGNSILGRRAFKSRSRSSAVTLTSELQQVQMKDGRILNVVDTPGLFDLAVHPDFLGKEIVKCIDLAKHGVHGVLFVLSVRNRFTAEEAAALESLQMLFGEKILRYMVVTFTGGDELEDNQETLEDYLHDSPLELQDLLRQCNNRNVLFNNKATSKTVQTKQVNELLKQIDIIIAENGGRPYSNELFHEAQERLSRQDDINSGGYSKEEIHHLKKQLENAYAEQLKQLTEMVEEKLRISTEKLEQRLSSEQVAREQAEKRAQKEQEEAGVKIGMLLEKLQKAQEETENLKKQMGSSNKCVIL*

Protein Length: 344

Fln nts: CGTCGTGACCTTGGCATGGGATTGCATTCTCCTCATTCCCAACGAGATGGCCTTCTGGATCAGAAATGGGCCGCTTTTAAGTTCGAAATTGGAGTTTTCCTGGGCCAGCTGGAGGTTTACATTTTGACATATTTCTAGGAATTGAAGGCCACACGAAAAATATAGGACTTGTGAATTCGTGCTCAATTTGCTGGTGCAGGGTGATTTAGTGA_-_ATGGAAGGCCCAAGGATGGGAAGAAGCAAAATAAACGAGATGGATGATTGGGAGTTGGCTGGACCTGCTACTGGCGTGACCACTCTAGTGTTGGTAGGACGCACGGGAAATGGTAAAAGTGCAACTGGTAATTCTATCCTTGGGCGCAGGGCCTTTAAGTCTCGTTCCCGTTCTTCGGCTGTTACACTCACTTCTGAATTACAACAAGTCCAGATGAAGGATGGCAGAATATTGAATGTGGTAGATACGCCAGGTCTTTTTGATCTTGCCGTCCATCCAGACTTTCTCGGCAAAGAAATTGTCAAGTGTATTGACCTTGCAAAGCATGGTGTTCATGGAGTTCTTTTCGTACTTTCTGTTAGAAATCGATTTACTGCAGAAGAAGCAGCTGCTTTAGAGAGCTTACAAATGTTGTTTGGGGAGAAAATTCTCCGCTACATGGTGGTTACCTTTACCGGGGGGGATGAGTTAGAAGACAATCAAGAGACATTAGAAGATTACTTACATGACAGCCCACTTGAACTTCAGGATCTTCTCCGCCAGTGCAATAATAGAAATGTCCTTTTCAATAATAAAGCTACTTCAAAAACAGTGCAGACAAAACAAGTAAATGAATTGCTTAAGCAAATAGACATTATAATTGCTGAAAATGGAGGTCGTCCTTATTCTAATGAGTTGTTCCATGAAGCTCAGGAAAGGTTAAGTCGACAGGACGATATAAACTCAGGTGGATACTCGAAGGAAGAGATACATCATTTGAAGAAACAGTTGGAAAATGCATATGCTGAACAGCTTAAACAATTAACTGAAATGGTAGAAGAGAAATTGCGTATAAGTACAGAAAAATTGGAGCAGCGTTTGTCTTCTGAGCAGGTTGCACGAGAACAGGCCGAAAAAAGAGCTCAAAAAGAACAAGAAGAAGCAGGTGTGAAAATCGGTATGCTTCTAGAGAAATTGCAAAAGGCTCAGGAGGAGACTGAAAACCTCAAGAAACAAATGGGCAGCAGCAACAAATGTGTTATTTTGTAA___TTGTGAATATTTATGTCTCCAAAACATATATCAATATAGTTAACGAAAGGCTTCAATGTCTTCTAGGTGCCTACAATGGGGATGTATGATTCAGTTTTGATATATTTGATCATGTTTTATTGCATGAATTTCTCTAACCTGTAACCTTTACCAGCTTTGCAAAACTATACCTGAACAGGGGATGAATATTTCAATTTGGATTAGTATATATTAATTCAATTGGAATCTACGTATACTCAAAAAGAGGTTCATACGATTAAAATATGGATCCTGAGCATGGATTATCTCCAAGGATGCTAATCTTAGTGATTTTCGTTCTTTTTGGTAGTCCTATCCTTTGTACTAGATTTGGAGAGTCAAAGTTGTATGATAGCATACATAAGAACTATTTCAATCGATAATCTTGCTTAAAAGATTTTTCATCTAAGG

Fln Alignment:

sp_v1.1_unigene30709___MGRSKINEMDDWELAGPAXXXXXXXXXXXXXXXKSATGNSILGXXXXXXXXXXXXVTLTSELQQVQMKDGRILNVVDTPGLFDLAVHPDFLGKEIVKCIDLAKHGVHGVLFVLSVRNRFTAEEAAALESLQMLFGEKILRYMVVTFTGGDELEDNQETLEDYLHDSPLELQDLLRQCNNRNVLFNNKATSKTVQTKQVNELLKQIDIIIAENGGRPYSNELFHEAQERLSRQDDINSGGYSKEEIHHLKKQLENAYAEQLKQLTEMVEEKLRISTEKLEQRLSSEQVXXXXXXXXXXXXXXXXGVKIGMLLEKLQKAQEETENLKKQMGSSNKCVIL
B8LPY9_______________MARSGIDEVDDWELAGPTTGVTTLVLVGRTGNGKSATGNSILGRRAFKSRSRSSAVTLTSELQQVQMNDGRILNVIDTPGLFDPAVHPDFLGKEIVKCIDLAKHGVHGVLFVLSVRNRFTAEEAAALESLQMLFGDKILDYMVVIFTGGDELEENQETLEDYLHDSPLELQELLRQCDNRKVLFNNKATSKTVLAKQVNELLEQTDIIISQNGGHPYSNELFREAQERLSRQEDIDSGGYSKEEIQHLKKQMENAYAAQLKQLTEMVEEKLRITTEKLEQRLSSEQAAREQAEKRAQKEQEEAGVKICMLLEKLQKAEEETENLKKQMGSGNKCVIL

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
249	75	12			0.975346
250	87		12		0.992554
251	87			12	0.992554
254	87			12	0.992554
258		12	87		0.992554
259		12	87		0.992554
260	87			12	0.992554
263	87		12		0.992554
264		12		87	0.992554
267			87	12	0.992554
268		12	87		0.992554
270		12	87		0.992554
272	12			87	0.992554
277		15	84		0.999986
279	84			15	0.999986
281		84	15		0.999986
284	15	84			0.999986
285		15		84	0.999986
286	84	15			0.999986
287		84		15	0.999986
296		84		15	0.999986
351	11	88			0.923564
352		11		88	0.923564
356		88	11		0.991528
357			11	88	0.991528
358			11	88	0.991528
385		90	10		0.90298
386		90		10	0.90298
388	10			90	0.90298
389		10		90	0.90298
619			88	11	0.991528
620		88	11		0.991528
622		11		88	0.991528
625	87	12			0.992554
742		80		20	0.995493
916	87		12		0.992554
1220	87		12		0.992554
1233		87		12	0.992554
1291	88		11		0.999937
1293	88	11			0.999937
1296			11	88	0.999937
1298	88	11			0.999937
1303	88		11		0.999937
1304	88	11			0.999937
1305	88			11	0.999937
1307			88	11	0.999937
1309		11		88	0.999937
1511		62		37	1.0
1559		71		28	1.0
1599	33			66	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain