SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30702

Length: 875 nt

Origin of reads: Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene30702

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	4-coumarate--CoA ligase-like 5 n=2 Tax=Arabidopsis RepID=4CLL5_ARATH	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	acyl:coa ligase	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	67%
Blast2go	response to wounding	GO:0009611	Biological Process	67%
Blast2go	peroxisome	GO:0005777	Cellular Component	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP93

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 185 aas, your sequence is shorter than subject: 284 - 548

Fln protein: MGALAAGLHGLGVRKGDVVLVISPNSIALPCIYLAILSIGAILTTANPLSTEAEISRQVEDSKPVIIFTPANLIKKVRATQSPVILIEGNTEEGSGRGCISTLNLLLQSDISGLPAVDIKQEDTATLLYSSGTTGKSKGVISTHRSLIAMISGALSRWDEMEGGEKICLFIIPLFHVFGFFCTLSCIAAGSNIVVLPKFDLAEMLSAIQKYRVKSLPAAPPILVALNKSPIVANYDLTSLHTMGCGGAPIGKDIIDNFAARFPTVQIKQGYGLTESNGQYPRL*

Protein Length: 285

Fln nts: ATGGGGGCCCTCGCTGCCGGATTGCATGGCCTCGGGGTTCGAAAAGGCGACGTGGTGCTGGTGATTTCCCCCAATTCCATCGCCCTTCCATGTATTTACCTCGCCATCCTCTCCATCGGAGCAATCCTCACAACCGCCAATCCGCTCAGCACAGAGGCAGAGATTTCAAGGCAGGTTGAGGATTCCAAACCCGTAATTATCTTCACACCAGCAAATCTGATCAAGAAGGTCCGTGCAACGCAATCGCCTGTCATTCTCATAGAGGGAAACACAGAGGAAGGATCGGGCAGGGGCTGTATTTCTACTTTAAACCTCCTCTTGCAGTCTGACATTAGCGGCCTCCCTGCAGTGGACATCAAACAGGAAGACACTGCCACGCTTCTCTACTCGTCGGGTACAACGGGCAAAAGCAAGGGAGTCATCTCCACCCATAGAAGTCTCATTGCCATGATATCTGGAGCTCTGAGCAGATGGGACGAGATGGAGGGAGGGGAGAAGATATGTTTATTCATCATCCCGCTGTTTCATGTTTTCGGATTTTTCTGTACACTTTCTTGCATTGCAGCTGGGAGTAACATTGTGGTCCTGCCCAAATTCGATTTGGCTGAAATGCTTTCGGCCATACAGAAGTACAGAGTGAAGTCCCTGCCTGCTGCTCCGCCTATTTTGGTCGCTTTAAATAAGTCTCCTATTGTTGCCAATTACGATTTGACTTCGCTTCACACGATGGGCTGCGGTGGAGCACCAATTGGCAAAGACATCATCGACAACTTCGCTGCTAGATTTCCAACTGTTCAAATTAAACAGGGTTATGGATTGACAGAGTCTAACGGGCAGTATCCTCGACTATAACCGATGAAGAAAACAGACATTAT

Fln Alignment:

sp_v1.1_unigene30702___VRKGDVVLVISPNSIALPCIYLAILSIGAILTTANPLSTEAEISRQVEDSKPVIIFTPANLIKKVRATQSPVILIEGNTEEGSGRGCISTLNLLLQSDISGLPAVDIKQEDTATLLYSSGTTGKSKGVISTHRSLIAMISGALSRWDEMEGGEKICLFIIPLFHVFGFFCTLSCIAAGSNIVVLPKFDLAEMLSAIQKYRVKSLPAAPPILVALNKSPIVANYDLTSLHTMGCGGAPIGKDIIDNFAARFPTVQIKQGYGLTESNG
B8LP93_______________IRKGDVVLVISSNSIALPCIHLAILSIGAILTTANPLSTEREIVTQVKDSKPVIAFTLSHLIHKLRATQIPIILIQGTLES----RCVTTLHDLLQSDLKDMPSIDIKQDDTATLLYSSGTTGKSKGVVSTHGNYIATIAGNRVRYE--TEGCKMYICSMPLFHIYGLRFLVCTLAAGATIVVPPKFDMEEILRSIERYRVTLLPTVPSVLAALAKSTGAQKYDLGSLQQISLGGAPLGKDVTLTFNAKFPRIQIRQGYGLTETTG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
171	33		66		0.997452
180	33		66		0.997452
245		75		25	0.996473
312		75	25		0.996473
336		75		25	0.996473
342	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain