SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30653

Length: 1226 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene30653

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger RING-type protein-like	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein binding	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS55

Fln msg: your sequence is shorter than subject: 351 - 829

Fln protein: PSDEQRRTARQSARYGQVQIPVHAFGFGIDHDAATMHAISEVSGGTFSFIQAESLVQDAFAQCIGGLLSVVVQDVRVTVSACTGTKLKSFHAGSYETCVTEDGGHGTVNLGDLYAEEERDILVELKLPAVKSASNPMNVISVSCFFKDPVSQRSFHSREQSFSILRPETTGGAPIALNLEVEKERNRLRTAQAIAEARTLADQGEMSGAQTVLQNAKIELQQTRTGDHSLSLALEAEITEIQARMTNKQTYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMADMVMRSQTLSATASSSPSSISTATSISARRTSEKLAKIAMLRKSCARVSDLHCFENGGF*

Protein Length: 352

Fln nts: CCCAGCGATGAACAGAGGCGGACCGCCAGACAAAGCGCGCGTTATGGCCAAGTTCAAATCCCCGTCCATGCCTTCGGCTTCGGAATAGACCACGACGCAGCCACGATGCACGCTATTTCTGAAGTATCCGGGGGTACGTTTTCGTTCATTCAGGCCGAAAGCCTCGTGCAAGACGCCTTCGCTCAGTGCATCGGCGGCTTACTCAGTGTCGTCGTACAGGACGTCCGAGTAACGGTTTCGGCGTGCACAGGAACAAAGCTGAAAAGTTTCCATGCCGGAAGCTATGAAACCTGCGTTACTGAGGATGGAGGCCACGGGACGGTAAATCTCGGTGACCTCTACGCCGAAGAAGAGAGAGATATACTCGTAGAACTCAAGCTTCCAGCCGTGAAATCTGCATCAAACCCTATGAATGTAATCTCTGTCAGTTGCTTCTTCAAAGACCCCGTCTCGCAGCGAAGTTTCCATTCAAGAGAGCAATCTTTTTCAATTTTGCGTCCGGAGACCACGGGCGGAGCTCCAATTGCCCTAAATTTGGAAGTGGAGAAGGAAAGGAACCGTCTCAGAACAGCTCAAGCAATAGCCGAGGCAAGAACGCTGGCCGATCAGGGTGAGATGTCAGGTGCACAGACTGTTCTTCAAAACGCCAAAATTGAATTGCAGCAGACTCGAACCGGCGACCACTCTCTTTCCCTTGCACTGGAGGCAGAAATTACAGAGATTCAAGCGAGGATGACGAACAAACAAACCTACGAGCGATCCGGGCGGGCGTTTGTGCTTTCAGCTCAGAGTTCCCATTTTCGACAGAGAGCCACAACGCGTGGCGAAAGCTTCGAGAGCTACAGCAGGGAATACCAGACGCCTTCCATGGCGGACATGGTTATGCGTTCCCAAACCCTCTCGGCTACGGCATCATCGAGCCCTTCTTCTATTTCTACCGCGACTTCGATCTCTGCTCGGCGAACGTCCGAGAAGCTGGCTAAAATCGCCATGCTGAGAAAATCTTGTGCCAGGGTTAGCGATTTGCATTGTTTCGAAAATGGTGGATTCTGA___GGTATGAGGTATGATTTCGTTAATCGTGTATAAATTTTGAAGATCAAGAAGAAGTGATGGGGATTGGAACCATTTCATTCTATATTTGTTCTGTGCCCAGTCTGTCTGTGTTTACCAATATAATTAATATTGTTTTGTTGTTCGGAAGTTTCAAGGCATCACAGGTTTCCCCT

Fln Alignment:

sp_v1.1_unigene30653___PSDEQRRTARQSARYGQVQIPVHAFGFGIDHDAATMHAISEVSGGTFSFIQAESLVQDAFAQCIGGLLSXXXXXXXXXXSACTGTKLKSFHAGSYETCVTEDGGHGTVNLGDLYAEEERDILVELKLPAVKSASNPMNVISVSCFFKDPVSQRSFHSREQSFSILRPETTGGAPIALNLEVEKERNRLRTAQAIAEARTLADQGEMSGAQTVLQNAKIELQQTRTGDHSLSLALEAEITEIQARMTNKQTYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMADMVMRSQTLXXXXXXXXXXXXXXXXXXXXXXXEKLAKIAMLRKSCARVSDLHCFENGGF
C0PS55_______________PSDEQRRSARQSTRYGHVQIPVHAFGFGVDHDAATMHAISEVSGGTFSFIQAESLVQDAFAQCIGGLLSVVVQDVRVTVSACAGTKLKSFHAGSYETCVAEDGSHGTVNLGDLYAEEERDILVELKFPAVKSASNPMNLISVGCFFKDPVSQRSFHSREQSFSILRPESTDGLPVALNLEVEKERNRLRTAQAIAEARTLADQGDMSGAQRVLQNAKIELQQTRTGDHSLSLALEAEITEIQARMTNIQTYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMADMVMRSQTLSATASSNPASISTATSISARRTSEKLAKIAMLRKSCARVSDLHGFENGGF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1146		13		86	0.999973
1177		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain