SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30619

Length: 613 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene30619 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Abc transporter family protein n=2 Tax=Arabidopsis RepID=D7LIF8_ARALY	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	atp-binding cassette transporter	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	76%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	76%
Blast2go	Thiamine metabolism	00730	76%
Blast2go	Metabolic pathways	01100	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	0.0	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter-like	IPR003439	-	0.0	76%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
451	40	60			1.0
452			40	60	1.0
454		60	40		1.0
455	40	60			1.0
458			40	60	1.0
459		40		60	1.0
464	60		40		1.0
470		60	40		1.0
471	40			60	1.0
473			40	60	1.0
536	66			33	0.997476
541			33	66	0.997476
542	33			66	0.997476
556		33		66	0.997464
559		33		66	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain