SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30607

Length: 1212 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene30607 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	slbp; histone RNA hairpin-binding protein	-	-	9.0e-21	39%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	44%
Blast2go	histone rna hairpin-binding protein	-	-	1.44306e-33	60%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A9TJM3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 64 aas, putative chimeric sequence, your sequence is shorter than subject: 232 - 669

Fln protein: VVTLAVTLSDKPPTSSPDNIVCSKDLEVSATSPRKCIPNHPPQKQQDCQASHMEMDIDQEEDALDGSSDEGCPVVDVSQRFIVADPPARPKGKEMLVESDAHKLCQRQKQIDYGKNTLGYERYLELVPRKQRKKYVHPQTPDIKQVCSKRSWDGQVKKWRRRLHEFDPPMSENEETPQLFSSDNGDAGSADHSQDEKDATTASGSEGDPKEEAGEVSAIYDDWDVDDAMES*

Protein Length: 233

Fln nts: CGTCGTGACCTTGGCGGTCACGCTTTCTGATAAGCCTCCCACTTCTTCTCCTGACAACATCGTTTGCTCTAAAGACCTGGAAGTGTCTGCTACTTCCCCAAGAAAATGCATTCCAAACCATCCGCCGCAGAAGCAGCAAGACTGCCAAGCTTCTCACATGGAAATGGATATTGATCAAGAAGAGGACGCTCTGGATGGTTCCAGTGACGAAGGGTGTCCCGTAGTGGATGTTTCCCAGAGGTTCATTGTTGCAGATCCGCCAGCCCGTCCAAAGGGAAAGGAAATGCTTGTTGAATCCGATGCACACAAATTGTGCCAGAGACAGAAGCAGATTGACTATGGGAAGAACACTCTCGGCTATGAAAGATACCTGGAGCTTGTTCCTCGAAAGCAGAGGAAGAAATATGTGCATCCTCAAACGCCTGACATCAAGCAGGTGTGCAGCAAGCGCAGCTGGGATGGGCAGGTCAAGAAATGGAGGAGAAGGCTTCATGAATTTGACCCCCCTATGAGCGAGAATGAGGAAACCCCTCAGCTGTTTTCTTCTGATAATGGAGATGCTGGATCAGCAGACCACAGTCAAGATGAGAAAGATGCAACAACAGCTTCTGGTTCAGAGGGCGATCCCAAAGAGGAAGCTGGTGAGGTCTCTGCAATCTATGATGATTGGGATGTTGATGATGCAATGGAGTCATGA___GTAAAACGGGACTACTTGGAAGCCTGCCTGTACATTCTTTTTCAGTTCTCTGGTTTTTGGGTTCTCTCAGTTTATATATAAACTGTATTGGTATAAATCTTGGTTTTTGTTTGTTAAGCCCAAGAAGAGTTTATTGGGCAGAAGCAATTGCAATTATTATTTTTTCCTGCTTCTCTGTTTACCAAGTATTACAAATGAATTCCAAAATGCATATTGTTATGGGTATCCTGCTAACCAGTTCACCGAGCTTAATACAACTTATTATACTGAGTCCTCTATTTTATATAGATCTTGATATTATTTTGAAGGAACAGTGATGCTTTGAGTCAAGTTGAAGCAAAAATATGGGTGATAATGGATTTGAGAATGAAATCAGATTTCCCCCACAGACATCAGGTAGGCTGTCTTGGCTACCAGAAATCTGGGCAATCAGTGAGTTTGGTGTTGTTTGGGCATATAGAGTCATTCATGGAGCAACTCAGCTTTCGTCTGATAGCTTGTTTTTACTGTGTTAA

Fln Alignment:

sp_v1.1_unigene30607___QKQQDCQASHME-MDIDQEEDALDGSSDEGCPVVDVSQRFIVADPPARPKGKEMLVESDAHKLCQRQKQIDYGKNTLGYERYLELVPRKQRKKYVHPQTPDIKQVCSKRSWDGQVKKWRRRLHEFDPPMSENEE-TPQLF--SSDNGDAGSADHSQDEKDATTASGSEGDPKEEAGEVSAIYDDWDVDD
A9TJM3_______________EKERDLEKELQEKLQKELEKENMPRPQPKPVAVVDYSHKFTVAKAPISAPTKQ--VEMDPHRLCQRQKQIDYGKNTLGYERYIEMVPRYKRTKS-HPRTPDIRQVCSKRSWDGQIRKWRRLLHEYDPPKGEDEEDSDQVFVPTRDLDNVRGSHPGDDMIDMQSDYVEDTDMK--------IYDGWSDEE

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
940	88			11	0.923564
973			18	81	0.999994
1053			20	80	0.999996
1072		12		87	0.992554
1170	80		20		0.995493
1172			80	20	0.995493
1173			20	80	0.995493
1174	20			80	0.995493
1177		80	20		0.995493
1180		20	80		0.995493
1183	80	20			0.995493
1184	80	20			0.995493
1185	20		80		0.995493
1187	80		20		0.995493
1191	20		80		0.995493
1192		20	80		0.995493
1195		20	80		0.995493
1203	75		25		0.996473
1209		50	50		1.0
1210	50	50			1.0
1211		50	50		1.0
1213	50		50		1.0
1216	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain