SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30598

Length: 1550 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene30598 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MSC domain containing protein	-	-	2.0e-33	21%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	43%
Blast2go	protein	-	-	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Inner nuclear membrane protein MAN1	IPR018996	-	0.0	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SRZ3

Fln msg: your sequence is longer than subject: 421 - 373

Fln protein: MQVSHTSEDLPNIPHCTEKLLTAFAMASSSSAPLPMSYSPHSASKSKRSKPSNTKPVNGGSHSQSSPPIEFPSKEQFIQLMGILAVAVFVGTSASYIINWSNRYFRPFCDTDADLQLSSGSCIPCPEHGRCSGGKLECVPGFKKYHGLCNENRELEKKAPKLADWIEGFACGLHAQSLCNGAGILWFPSNDLRREAHQLLLKMQLSLNTDEEIAFVEEKAMEIIHNSFETRTTFDGLEEFKCPDWLAERYKPFKCRTQEWISQHYLFLFVVSPVVFTFTKFLWGVYRGKRMIARAEQLYQQVCEALEDKAIMEKSKGKEGEPWVVASRLRDHLLLPRERKNAVLWRQVEEFIQEDSRIDQYPKLVKGESRVVLEWQVEGALRSRAQCGDLHQRVFSSQESSNVLDENLHLSHAPVAGLND*

Protein Length: 422

Fln nts: CTTAAAGCCGAAGCAATGGCAATCTCTTTGA_-_ATGCAGGTGTCTCATACATCTGAAGACCTTCCTAACATACCCCATTGTACAGAGAAACTCCTAACTGCATTTGCCATGGCTTCCTCTTCCTCCGCTCCTCTTCCCATGTCATACAGCCCTCACTCAGCTTCCAAATCCAAACGTTCAAAACCCTCCAATACAAAACCCGTGAACGGCGGCAGTCACAGTCAGAGTTCTCCTCCAATTGAATTTCCTTCCAAGGAGCAGTTCATCCAGCTAATGGGCATTTTGGCAGTAGCAGTGTTCGTGGGCACCTCTGCCAGTTACATAATAAACTGGTCCAACCGCTACTTCAGACCATTCTGTGACACAGATGCTGATCTGCAACTGTCATCAGGTTCTTGTATACCTTGTCCAGAGCATGGTAGATGTTCAGGAGGCAAATTGGAATGTGTTCCTGGGTTCAAAAAGTATCACGGATTGTGTAATGAAAACAGAGAGCTTGAGAAGAAAGCCCCAAAACTTGCTGATTGGATTGAAGGCTTTGCTTGTGGACTGCATGCTCAATCATTGTGTAATGGAGCTGGGATACTTTGGTTTCCCAGCAATGACCTTAGAAGAGAAGCGCATCAACTTCTGCTAAAGATGCAGCTCAGCCTGAACACTGATGAGGAGATTGCATTTGTAGAAGAAAAGGCAATGGAGATCATACACAACTCATTTGAGACGAGGACAACATTTGACGGGTTGGAGGAATTCAAGTGTCCTGATTGGTTGGCAGAACGATATAAGCCATTTAAGTGTCGTACTCAAGAATGGATCTCCCAACATTACTTATTTTTGTTTGTAGTTTCTCCAGTGGTCTTTACATTTACTAAATTTCTCTGGGGTGTGTATCGCGGAAAAAGAATGATTGCTAGAGCCGAACAGCTGTATCAGCAGGTTTGTGAGGCACTTGAAGACAAAGCAATTATGGAGAAGTCAAAGGGAAAGGAAGGAGAGCCTTGGGTTGTTGCTTCTCGACTCAGGGATCATCTTCTCTTACCAAGAGAGAGAAAAAATGCCGTTCTTTGGAGGCAGGTTGAGGAATTCATCCAAGAGGATTCTCGCATTGATCAATATCCTAAACTTGTGAAAGGTGAATCCAGAGTTGTGCTGGAATGGCAAGTAGAAGGGGCATTGCGTTCAAGAGCACAGTGTGGAGATTTGCACCAAAGAGTATTCTCATCACAGGAGAGCTCAAATGTGCTGGATGAAAATCTCCATCTGTCACATGCTCCAGTTGCAGGTCTTAATGACTGA___TTATACGTCAAGAAGATGTTTTCAAGAATAAGGATGTTGGACAAACTGTGGTGAATATGGAACGAGTGGCTATTGTATAATCCATCAATCTCTTCAAGTGGATATAATAGATATGTAATGTAGATGCAATCCGTTCGTCTATTGCAGTTTGAGTACTTTCATTATATAGTACTCCTGTACACTACAGCCAAGACTTGGCTTTAGAAAATAATGGATGTATATCAAAATTTTGTATCATTCATATTGTAGTGTACAT

Fln Alignment:

sp_v1.1_unigene30598___SASKSKRSKPSNTKPVNGGSHSQSSPPIEFPSKEQFIQLMGILAVAVFVGTSASYIINWSNRYFRPFCDTDADLQLSSGSCIPCPEHGRCSGGKLECVPGFKKYHGLCNENRELEKKAPKLADWIEGFACGLHAQSLCNGAGILWFPSNDL--RREAHQLLLKMQLSLNTDEEIAFVEEKAMEIIHNSFETRTTFDGLEEFKCPDWLAERYKPFKCRTQEWISQHYLFLFVVSPVVFTFTKFLWGVYRGKRMIARAEQLYQQVCEALEDKAIMEKSKGKEGEPWVVASRLRDHLLLPRERKNAVLWRQVEEFIQEDSRIDQYPKLVKGESRVVLEWQVEGALRSRAQCGDLHQRVFSSQESS
B9SRZ3_______________SSSTNKRRKP-NLSPSSSPTLLTGPPNNLFPSKEEFVRLIAVLAIASSVAFTCNLIATYINPSTKPFCDSNTDS--FSEFCVPCPENGECTQGKLECAEGYRKHRNICIEDGDINERAKKLSEWVENHLCEAYAQYLCDGIGTIWFQDNDIWYDLDGHQLMENFQPDNAT---YIYAKRKAMEMIVRLLEIRTNSHGNKELKCPDLVAEHYKPFTCRFRQWISNHAFVIASLCSLVVGAVLLLRKLQRRWYLSARGEELYHQVCEVLEENALMSKQSNGECDSWVVASQLRDHLLLPKERKDPVLWKRVEQLVQEDSRVDRYPKLVKGESKVVWEWQVEGSWSS----GRIRKKEASKLKSS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
773		50		50	1.0
828	25		75		0.996473
839		25		75	0.996473
947		25	75		0.996473
949		25		75	0.996473
950	25			75	0.996473
951	25	75			0.996473
1089	66	33			0.997452
1091	66	33			0.997452
1243			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain