SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30565

Length: 491 nt

Origin of reads: Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene30565
TACTATTGGGCAAGGGAAGAATCTTGATGAAGTCTCCAGAAGTCTTGAACGTGTGCTGCTTACCATGAGAATAAGCAGTACTGAACATAAGGATGTTGCGTTTATTGTTGATGGGTGGACATTGGAGATCATTCTTAAGCATCGTTATGAAGCTTTTACTGATTTGGCCATGCTGTCAAGGACAGCCATCTGTTGTCGTGTAACACCATCACAGAAAGCCCAGCTTGTAGAACTTCTAAAAGCATGTGATTACAGAACACTGGCCATTGGAGATGGTGGAAATGATGTGAGAATGATTCAGGAGGCACATATAGGGGTAGGCATCAGTGGACGGGAGGGCATGCAGGCTGCAAGGGCTGCAGACTTCAGCATTGGAAAATTCAAGTTCCTGAAGCGTCTAATTCTTGTACATGGAAGATATTCATACAATAGAACTGCATTTTTGTCCCAATATTCATTCTACAAATCATTATTGATTTGTTTTATTCAGA

Ace file of the UniGene sp_v1.1_unigene30565

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phospholipid-transporting atpase, putative n=1 Tax=Ricinus communis RepID=B9RVV5_RICCO	-	-	86%
FL-Next	sp=Phospholipid-transporting ATPase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	83%
Blast2go	haloacid dehalogenase-like hydrolase family protein	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	hydrolase activity, acting on acid anhydrides	GO:0016817	Molecular Function	91%
Blast2go	transporter activity	GO:0005215	Molecular Function	91%
Blast2go	cell part	GO:0044464	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	91%
Blast2go	HAD superfamily hydrolase-like, type 3	IPR013200	-	91%
Blast2go	HAD-like domain	IPR023214	-	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P98205

Fln msg: Distance to subject end: 283 aas, your sequence is shorter than subject: 163 - 1107

Fln protein: TIGQGKNLDEVSRSLERVLLTMRISSTEHKDVAFIVDGWTLEIILKHRYEAFTDLAMLSRTAICCRVTPSQKAQLVELLKACDYRTLAIGDGGNDVRMIQEAHIGVGISGREGMQAARAADFSIGKFKFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQ

Protein Length: 164

Fln nts: TACTATTGGGCAAGGGAAGAATCTTGATGAAGTCTCCAGAAGTCTTGAACGTGTGCTGCTTACCATGAGAATAAGCAGTACTGAACATAAGGATGTTGCGTTTATTGTTGATGGGTGGACATTGGAGATCATTCTTAAGCATCGTTATGAAGCTTTTACTGATTTGGCCATGCTGTCAAGGACAGCCATCTGTTGTCGTGTAACACCATCACAGAAAGCCCAGCTTGTAGAACTTCTAAAAGCATGTGATTACAGAACACTGGCCATTGGAGATGGTGGAAATGATGTGAGAATGATTCAGGAGGCACATATAGGGGTAGGCATCAGTGGACGGGAGGGCATGCAGGCTGCAAGGGCTGCAGACTTCAGCATTGGAAAATTCAAGTTCCTGAAGCGTCTAATTCTTGTACATGGAAGATATTCATACAATAGAACTGCATTTTTGTCCCAATATTCATTCTACAAATCATTATTGATTTGTTTTATTCAGA

Fln Alignment:

sp_v1.1_unigene30565___GKNLDEVSRSLERVLLTMRISSTEHKDVAFIVDGWTLEIILKHRYEAFTDLAMLSRTAICCRVTPSQKAQLVELLKACDYRTLAIGDGGNDVRMIQEAHIGVGISGREGMQAARAADFSIGKFKFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQ
P98205_______________GKTEEDVSRSLERVLLTMRITASEPKDVAFVIDGWALEIALKHHRKDFVELAILSRTAICCRVTPSQKAQLVEILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGRFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQ

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
248		14		85	0.993533
251		14	85		0.993533
252	85		14		0.993533
254			14	85	0.993533
258		14	85		0.993533
259	85			14	0.993533
260	85			14	0.993533
261		85	14		0.993533
262	85		14		0.993533
267		85		14	0.993533
270		14		85	0.993533
272		14	85		0.993533
273	14		85		0.993533
318	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain