SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30550

Length: 1029 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene30550

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin efflux carrier-like protein (Fragment) n=10 Tax=Picea sitchensis RepID=E0ZCK8_PICSI	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	auxin efflux carrier-like protein	-	-	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Auxin efflux carrier	IPR004776	-	0.0	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL56

Fln msg: your sequence is shorter than subject: 247 - 426

Fln protein: KKEELENGLDEKIPNNDSFSAGETSKLLQTIQIIPEVPTSGGDYPSDEQKANGMAVFHSSRCSIPPAFKRYMNETGNLILEELKEPPTIGVAAGFIVGAIPQVKALFVGVSSPLRVIQDSISLLGDGTIPGIILVMGGSLVKGLSSSKLRPWVIVLVVFVKFMLLPLIGIFVVQGASNLGLLPEDPLYHFVLMVQYTVPPAMNIGTMAQLFNVGEQECSVLFLWTYLLAAIAITFWSTVYMWILFP*

Protein Length: 248

Fln nts: GAAAAAAGAGGAATTAGAAAATGGACTTGACGAGAAGATCCCAAATAATGATTCTTTTAGTGCTGGAGAAACATCTAAGCTTTTGCAGACAATCCAAATTATTCCAGAGGTGCCAACCTCTGGAGGAGATTATCCTTCTGATGAGCAGAAGGCAAATGGCATGGCGGTGTTCCATTCCTCCAGGTGTTCCATTCCTCCAGCTTTTAAACGCTACATGAATGAAACTGGAAACCTAATCCTTGAGGAGTTAAAAGAACCTCCCACTATTGGTGTGGCTGCAGGATTTATTGTTGGAGCAATCCCACAAGTAAAGGCTTTATTTGTTGGTGTATCTTCTCCTCTTCGAGTGATCCAAGATTCCATTTCTTTACTGGGAGATGGAACCATCCCAGGCATCATCCTTGTAATGGGAGGAAGTTTAGTCAAAGGTTTAAGTTCTTCAAAGTTAAGACCTTGGGTTATTGTGTTGGTTGTCTTTGTGAAGTTCATGTTACTTCCATTGATTGGAATATTCGTAGTTCAAGGAGCATCCAATCTTGGGTTATTGCCAGAAGATCCATTGTATCACTTTGTACTGATGGTCCAATACACAGTCCCACCTGCTATGAATATTGGAACAATGGCACAATTATTCAATGTGGGGGAACAAGAGTGCTCTGTGCTTTTCTTATGGACTTATCTCCTGGCAGCCATTGCCATCACCTTCTGGTCAACAGTATATATGTGGATACTGTTTCCATAA___TTTTTTTGGAACTTCATTTTGTCAAGCTCATTGGTTGCATTATTAATCCGCTTCAACCAATGTTGAAGAGCTATTAGTCTTGACTCTTCATTGGTTCCATTCATTCGTTATATTTATACAATGCATTATTTAAATTCCCTTTTAAGAATATGATTCGTATTCTTCCCGCTTGGAATCGATTAATATTTCTCTGCAAATGAATATATTCTTACAAACAATAAATAAATCCATCTAAGATCTGCTATTCATGGGAAAACGATAAACTCGAATCAGCTGTTTAAGAAAAT

Fln Alignment:

sp_v1.1_unigene30550___KKEELENGLDEKIPNNDSFSAGETSKLLQTIQIIPEVPTSGGDYPSDEQKANGMAVFHSSRCSIPPAF-------KRYMNETGNLILEELKEPPTIGVAAGFIVGAIPQVKALFVGVSSPLRVIQDSISLLGDGTIPGIIXXXXXXXXXXXXXXXXRPWVIVLVVFVKFMLLPLIGIFVVQGASNLGLLPEDPLYHFVLMVQYTVPPAMNIGTMAQLFNVGEQECSVLFLWTYLLAAIAITFWSTVYMWILF
B8LL56_______________EEKEFKNGLEEKIPNIDY--AGETSKLLQTIQIIPEVPSSGGDYPSDKQSASGLVVVNSSSSKKPSCFQAWPRKVKQYMKKTADLLFEELKAPPTIGVIAGFMVGAIPPVNALIVGASAPLRVIQDSISLLGDGAIPGIILLMGGHLVKGLSSSKLRPMIIVLIICAKFVLLPVIGIFVVKGASNLGLLPADPLYHFVLMIQYTVPPAMNIGTMAQLFNVGEQECSVIFFWTYLLAAISLTFWSTVYMWILF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
438	72	5		16	1.0
439	77	16		5	1.0
440	16	5	77		1.0
572	92		7		0.999532
573	92			7	0.999532

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain