SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30486

Length: 996 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene30486 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF88 domain containing protein	-	-	2.0e-14	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	protein	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NYN domain, limkain-b1-type	IPR021139	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKC8

Fln msg: Distance to subject end: 174 aas, your sequence is shorter than subject: 331 - 593

Fln protein: AVTTFKAYGDFNNIPPGVREGCFKTRVKFIDVPTSKKDAADKAILVDMVLFALDNRPPSTIFLISGDVDFAGALHKLGQRGYTVVLAIPPGVRVSKALYNAGRFVWDWRSIARGEDPLSPPPELACYRVGYSSSEDSDVPNDEEANVYKEVRQNGYIVGTSSTQSYTLNSTHKAADLSRIQLAGPSGQPGAAISRGFSSFSITSSSSAQSISPIARTSSAPINVSKSLPVSLFTDAGSSSTSSDTSLASNSTARVQPGDIEGLNRNFPKFVNTAGRKKPSHPVRRKGRRGRGRGHQFERREPRSEAPVGQQHGWRTMQPVFQEAKALQEDS

Protein Length: 332

Fln nts: AGCAGTGACCACCTTTAAAGCATATGGAGATTTTAATAATATCCCTCCAGGAGTCAGAGAGGGCTGTTTTAAGACACGGGTAAAATTTATCGATGTTCCCACAAGCAAAAAGGATGCAGCAGATAAAGCTATTTTAGTTGACATGGTCTTGTTTGCTCTTGATAATCGCCCTCCTTCTACTATCTTTTTAATTTCTGGTGATGTTGATTTTGCTGGTGCTTTGCACAAATTGGGGCAACGTGGTTACACAGTTGTGCTTGCTATTCCACCTGGAGTGAGAGTCTCTAAGGCACTTTACAATGCTGGGCGATTTGTGTGGGACTGGCGTAGCATTGCTCGCGGTGAGGACCCTTTGTCACCGCCACCTGAGTTGGCTTGTTATAGAGTTGGGTACTCCTCAAGTGAAGACTCAGATGTTCCAAATGATGAAGAGGCTAATGTCTATAAAGAAGTGCGACAGAATGGCTATATTGTTGGAACAAGTTCAACCCAGAGTTACACCTTGAATTCAACACATAAAGCTGCAGATTTGTCCAGAATTCAATTGGCAGGACCATCGGGACAACCCGGTGCTGCCATTTCAAGGGGCTTCAGTAGCTTTTCAATAACGTCATCTTCATCTGCGCAAAGTATTAGTCCAATTGCGAGAACTTCCTCTGCACCAATAAATGTTAGCAAATCTTTGCCAGTATCACTTTTTACGGATGCTGGTAGCTCCAGTACATCATCTGATACCAGTCTAGCATCAAATTCAACTGCCCGGGTTCAGCCAGGTGATATTGAAGGTTTGAATCGGAATTTTCCGAAGTTTGTAAATACAGCAGGCCGGAAGAAACCCTCACACCCAGTCCGAAGAAAAGGACGCAGAGGCAGAGGTAGAGGACATCAATTCGAAAGGCGGGAACCGAGATCAGAAGCTCCAGTTGGCCAGCAACACGGATGGAGAACCATGCAACCTGTGTTTCAAGAGGCCAAGGCACTGCAGGAGGACTCAGA

Fln Alignment:

sp_v1.1_unigene30486___AVTTFKAYGDFNNIPPGVREGCFKTRVKFIDVPTSKKDAADKAILVDMVLFALDNRPPSTIFLISGDVDFAGALHKLGQRGYTVVLAIPPGVRVSKALYNAGRFVWDWRSIARGE------DPLSPPPELACYRVGYSSSEDSDVPNDEEANVYKEVRQNGYIVGTSSTQSYTLNSTHKAADLSRIQLAGPSGQPGAAXXXXXXXXXXXXXXXXXXXXXIARTSSAPINVSKSLPVXXXXXXXXXXXXXXXXXXXXXTARVQPGDIEGLNRNFPKFVNT
B8LKC8_______________AVTFFSAYGDFNNFPRKLREGCQRTGVNLIDVPSGKKDAADKAILVDMFLFALDNPPPSTILLISGDVDFAPALHKLGQRGYTVVLAIPAGVGVSSALCNAGRFVWDWPSVARGEGLVPAKSFLSRSPELACYPPGCFSSDDSDLPNDEEAIVYKGMPQNRYIVGTSSTQTYTLHSTHIAADLSRISLAGPSAQASAAMSRSFSSFPMPSSSFAQNNIPIARTSSTPINVSKSLPVSHITDAGRSGTPSDISPAPNSTSWVQPGDIQGLKGQLLKLVNT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
681		14		85	0.993533
686		85	14		0.993533
716		14		85	0.993533
725			14	85	0.993533
726	14			85	0.993533
735		14		85	0.993533
744	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain