SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30386

Length: 1265 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene30386 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	short chain alcohol	-	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ34

Fln msg:

Fln protein: MANEKVNGVAACVDSLSFNGSERRLEGKVAIVTGGAMGIGEAIVRLFTKHGAKVIIADLADKAGKSLAEQLSPSATYVHCDVSKEEDISTVVDLAVQKHGQLDIMYNNAGINDAVLVKSVAEYDMVEYDRVMSVNVRGVMLGIKHAARVMIPRKKGSIISTGSLASTVGGSAPYAYTASKHAVIGLTKNGAAELGKYGIRVNAVSPSAVATPFTAMMMRGGADSSPLSEMEKAAIEGHCNRIGNLQGPTLRVEDVAEAGLYLASDEAKYVSGHNLVVDGGTTVVNHSWGLYRP*

Protein Length: 295

Fln nts: CGTCGTGACCTTGGCTGTCACTCATACAATCTGATTCCAGTTCTTAATAATTTGCCCGTGAGAATAATTCCCTTCCTGCATCATCTAATTGCCCGATCTCGCTCCCCAGCC_-_ATGGCTAACGAAAAGGTTAATGGAGTTGCTGCCTGCGTTGACAGTCTGAGCTTTAATGGATCAGAGCGAAGGCTGGAGGGCAAGGTTGCAATAGTAACAGGCGGAGCAATGGGAATAGGAGAAGCCATTGTTCGGCTCTTCACAAAGCACGGAGCCAAAGTCATAATCGCAGATTTAGCAGACAAAGCCGGTAAAAGTCTTGCCGAACAGCTTTCTCCTTCGGCAACTTATGTGCACTGCGATGTGAGCAAAGAGGAAGACATCAGCACAGTGGTGGATTTGGCCGTGCAGAAACACGGGCAGCTCGATATAATGTACAACAACGCCGGTATCAACGATGCGGTTCTGGTGAAGAGCGTTGCAGAGTACGACATGGTAGAATACGATCGGGTAATGAGCGTAAACGTAAGAGGGGTGATGCTGGGCATCAAGCACGCGGCCCGGGTGATGATTCCGAGGAAGAAGGGCTCCATAATCTCAACCGGCAGCCTCGCAAGTACGGTAGGAGGATCTGCCCCATACGCATACACGGCCTCCAAACATGCAGTGATAGGGCTCACAAAAAACGGCGCGGCTGAGCTTGGGAAATACGGGATCAGGGTCAACGCCGTTTCTCCTTCTGCCGTCGCGACGCCTTTTACTGCCATGATGATGAGAGGGGGCGCGGATTCCTCGCCTCTTTCTGAAATGGAGAAGGCCGCCATAGAGGGTCACTGCAATCGAATCGGCAACTTACAGGGGCCGACTCTTAGAGTGGAGGATGTTGCGGAGGCTGGGCTGTATTTGGCTAGCGACGAGGCGAAGTATGTTAGCGGGCACAACCTTGTCGTGGATGGAGGGACTACTGTTGTCAATCACTCCTGGGGGCTCTACCGACCATAA___TTCATCCATAGTTCAATAATTTTATGCTAATAGTTGCATCCATGAGCAGACCTACCTCTATGTTTTCTATGTATTGTATGCAATAATATTTATGAACAGATGCGTTAGGATAGTGTTTTCGGGAATGGGCCACATAGTCCATTTTCAAAAACCATGACACTTATTGTGTTTTTATAAGATTGCATCTTTATTGTTGTGTTTTTATAAAATTGCAGGTAATAAATGAGCTTACATGTAAAAAACATAGAGGTAGGTCTGCTCATGGATGCAAC

Fln Alignment:

sp_v1.1_unigene30386___MANEKVNGVAACVDSLSFNGSERRLEGKVAIVTGGAMGIGEAIVRLFTKHGAKVIIADLADKAGKSLAEQLSPSATYVHCDVSKEEDISTVVDLAVQKHGQLDIMYNNAGINDAVLVKSVAEYDMVEYDRVMSVNVRGVMLGIKHAARVMIPRKKGSIISTGSLASTVGGSAPYAYTASKHAVIGLTKNGAAELGKYGIRVNAVSPSAVATPFTAMMMRGGAD-SSPLSEMEKAAIEGHCNRIGNLQGPTLRVEDVAEAGLYLASDEAKYVSGHNLVVDGGTTVVNHSWGLYRP
A9NQ34_______________MSNEEVNGDSACVGSLSFNGSDRRLEGKVAIITGGAMGIGEAIVRLFTKHGAKVIIADFADEAGKNLAEHLSPLATYVHCDVSKEQDISAVVDLAIEKHGQLDIMYNNAGINDTVMGKSVAEYDMEQFDRVMSVNVRGVMLGIKHAARVMIPRKKGCIISTGSLASMLGGLSPYSYTAAKHAVIGLTKNGAAELGKYGIRVNAVSPSGVATPFTAKMMRGGADSSSPISEKEKALIEGHSNRIGNLQGPTLKVEDIAGAGLYLASDEAKYVSGHNLVVDGGFTVVNHSWGLYRP

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
92	75		25		0.996476
109	75	25			0.996473
138	42		57		1.0
807	77		11	11	0.968132
940	85		14		0.993533
1023		11	88		0.923564
1035	22		77		0.999999
1118	66		33		0.997452
1139	75		25		0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain