SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30245

Length: 1045 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene30245

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to DTW domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001983E3F	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	dtw domain-containing protein	-	-	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DTW	IPR005636	-	0.0	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8T4

Fln msg:

Fln protein: MEDCRGDENQKQRRREKCRGGCERPASVCLCNVLPSEALQTSTHIIILQHPHEVRHKLSTVPLLQKCLRNSQVIVGRRLHIGSSPILDAISSQSGAENSKCWQVLLLFPGEEAMDLETWISDRAQSGMPDHPQNENKNGGILVLLIVIDGTWQHAKEMVKASMAFLSSINAFQVCLPYDRNTQGHNMWNSDLILRKEPFGGCVSTMEAVAHSLRILEPTPFAVEIEQRLLSVLRAMVAFQSHNLKPMNPRPRLHKKGH*

Protein Length: 260

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCTCTATTTTCCCAAGAAAGCAAATTGGCAATTTTAGGGTTGAAGTCCGGAAGGATACAAAATTAATAAGAGGTAGTGGTAAATGAACTGTA_-_ATGGAGGATTGCCGGGGAGATGAAAATCAGAAGCAGCGGCGGAGGGAGAAGTGCAGAGGAGGGTGTGAGCGACCCGCTAGTGTATGTCTCTGCAATGTATTGCCATCCGAAGCTCTCCAGACTTCAACCCACATTATCATATTGCAGCACCCACACGAAGTTCGTCACAAACTGTCAACGGTCCCTCTTCTCCAAAAATGTCTCCGCAATTCCCAAGTTATAGTCGGCCGTCGTCTGCATATCGGTTCCTCGCCCATCCTCGATGCTATTTCCAGCCAATCTGGTGCAGAGAACTCCAAGTGCTGGCAGGTACTATTGCTGTTCCCTGGCGAAGAAGCAATGGATTTAGAGACATGGATTTCCGATCGAGCACAATCAGGTATGCCCGATCATCCTCAGAATGAGAATAAAAATGGTGGGATATTGGTACTGTTGATAGTTATTGATGGGACATGGCAGCATGCGAAGGAAATGGTTAAGGCAAGCATGGCTTTCCTTAGCAGTATCAATGCCTTCCAAGTTTGTCTACCATATGACCGGAATACACAGGGGCATAACATGTGGAATTCCGATCTAATTCTGAGAAAAGAGCCATTTGGGGGTTGTGTGAGCACAATGGAGGCTGTTGCACATTCCTTAAGAATTCTGGAACCCACACCCTTTGCTGTTGAGATTGAGCAGAGACTTCTATCCGTGTTGCGTGCTATGGTTGCGTTCCAATCCCATAATTTGAAGCCTATGAATCCTCGCCCTAGACTGCACAAGAAAGGTCACTGA___CCCACGGCCACATCAAACAAAACACAAGTATGCATGTGTATTCTGTAGCATTGCAGGTCACATCTCAGTCAGAGTTTGTTGTTGGTGCCAGTCAGTAGCAATGCTGGAACAGGAAATTCGTTCGGCCACCTACAACATCAACTGAATTGC

Fln Alignment:

sp_v1.1_unigene30245___MEDCRGDENXXXXXXXXXXXXXXXPASVCLCNVLPSEALQTSTHIIILQHPHEVRHKLSTVPLLQKCLRNSQVIVGRRLHIGSSPILDAISSQSGAENSKCWQVLLLFPGEEAMDLETWISDRAQSGMPDHP-QNENKNGGILVLLIVIDGTWQHAKEMVKASMAFLSSINAFQVCLPYDRNTQGHNMWNSDLILRKEPFGGCVSTMEAVAHSLRILEPTPFAVEIEQRLLSVLRAMVAFQSHNL-KPMNPRPRLHKKGH*PTAT
D5A8T4_______________MEDCRGEQKQKQQREKCRGGCER-PANVCLCNVLPSEALETSTRIIILQHPHELRHKLSTVPLIQKCLHNSQVIVGRRLHMGSSPILDAICSQSDAEKSKCGHVLFLFPGEEATDLETWISNRAQSGMPDHPPQIENENGGILLLLIVIDGTWQHAKEMVKASMAFLSSIKAFQVCLPYDRNTQGHSMWNSDLILRKEPFGGCVSTIEAVARSLRILEPTPFAVEIEHRLLSVLHAMVAFQSHNLKKPMKPRPRLHKKGHCPTAT

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
685	66		33		0.997464
687	66		33		0.997464
690	66	33			0.997464
774	75	25			0.996479
775			25	75	0.996479
778			25	75	0.996479
779			75	25	0.996479
782	75	25			0.996479
785		66		33	0.997452
786		66	33		0.997452
787	66		33		0.997452
789	66			33	0.997452
790		66	33		0.997452
791		75		25	0.996478
793	25			75	0.996486
794		33		66	0.997452
796		14	85		0.993533
797	14	85			0.993533
798	14			85	0.993533
800	14			85	0.993533
801			14	85	0.993534
802			85	14	0.993535
804		14	85		0.993538
807			14	85	0.993535
809	85		14		0.993535

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain