SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30185

Length: 978 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene30185

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Integral membrane family protein n=3 Tax=Arabidopsis RepID=D7LZD2_ARALY	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	integral membrane family protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF92, TMEM19	IPR002794	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSQ5

Fln msg: STOP codon was not found. Distance to subject end: 10 aas,

Fln protein: MEDVALRGCVGVVIASLIAGWAFRRNSLNLSGAFAGFMVMATSITASYRFGALLLVFFFTSSKLTKRGAEKKREIDAHYKEGGQRDWLQVLINSSLATTLALGVAFLTDWNDSCLDSEKAPLVTCLIGGILGHYACCNGDTWSSEVGVLSSSQPRLITTFKHAPRGTNGGVTILGLVAAAAGGAVIGLTFVMAGLFTASCDGRLASRQLLAFPIGAFAGLFGSVIDSLLGATVQYSGFCAVRKKVVEKPGPTVKKISGENILSNNGVNFVSVLLTT

Protein Length: 277

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATTATTCTAAAGACTGTGATTGATTTTAATTGGTTTTAACCTACGAGTAAAGAAGCGAATAAATCGGCGCATCATGAGAGTATGTTCGGTGTAGAAAAGCAGCGAGGCAACGGGTCGTCAAA_-_ATGGAGGATGTAGCGCTAAGAGGTTGCGTTGGGGTGGTGATTGCATCACTCATAGCAGGATGGGCTTTCCGACGGAACTCTCTAAATCTGTCCGGTGCTTTTGCTGGGTTCATGGTAATGGCAACATCCATTACGGCTTCTTACAGGTTTGGAGCTCTTCTACTCGTGTTTTTCTTCACCTCCTCAAAGCTCACCAAACGTGGCGCTGAAAAGAAGCGCGAAATCGATGCTCACTATAAAGAAGGAGGGCAGCGGGACTGGTTACAGGTGTTAATTAATAGTTCACTTGCCACAACATTAGCATTAGGAGTTGCATTTTTGACAGACTGGAATGACAGCTGTTTGGATTCAGAAAAGGCTCCTTTGGTGACTTGTTTAATTGGAGGTATTCTTGGGCACTATGCTTGCTGCAATGGTGACACTTGGTCCTCAGAAGTTGGTGTTCTTAGTAGCAGCCAGCCTCGTCTCATCACTACTTTCAAGCATGCTCCGCGTGGTACAAATGGAGGAGTGACTATTTTAGGCCTTGTTGCAGCTGCAGCTGGAGGTGCTGTGATTGGGCTAACCTTTGTAATGGCAGGGTTGTTCACAGCAAGTTGTGATGGCCGGTTAGCATCAAGGCAATTACTAGCATTTCCAATTGGTGCTTTTGCAGGCCTTTTTGGTAGTGTTATTGACTCTCTGTTGGGCGCCACAGTGCAGTATAGTGGGTTTTGTGCTGTGCGGAAGAAAGTCGTAGAAAAACCAGGGCCAACTGTCAAGAAAATCTCTGGGGAAAATATTCTTAGCAACAACGGAGTGAATTTTGTTTCAGTGCTGTTGACGACACT

Fln Alignment:

sp_v1.1_unigene30185___MEDVALRGCVGVVIASLIAGWAFRRNSLNLSGAFAGFMVMATSITASYRFGALLLVFFFTSSKLTKRGAEKKREIDAHYKEGGQRDWLQVLINSSLATTLALGVAFLTDWNDSCLDSEKAPLVTCLIGGILGHYACCNGDTWSSEVGVLSSSQPRLITTFKHAPRGTNXXXXXXXXXXXXXXXXXXXXXFVMAGLFTASCDGRLASRQLLAFPIGAFAGLFGSVIDSLLGATVQYSGFCAVRKKVVEKPGPTVKKISGENILSNNGVNFVSVLLTT
A9NSQ5_______________MENVAIRGCVGVVLASLIAGSSFRRNSVNLSGAFAGFLVMAATITASYRFGALLLVFFFTSSKLTKRGAEKKREIDAHYKEGGQRDWLQVLINSSLATALALGVAFLTDWNDSCLDSEKAPLVTCLIGGILGHYACCNGDTWSSEVGVLSSSQPRLITTLKHAPRGTNGGVTISGLVAAAAGGAVIGLTFVVAGLFTASCEGQLASKQLLAFPIGAFAGLFGSVIDSVLGATVQYSGFCAVRKKVVGKPGPTVKKISGQNILSNNGVNFVSVLLTT

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
113	66			33	0.999977
115		33	33	16	0.999357
116	16		83		0.994512
118			66	33	0.999928
189	12		87		0.992554
211		11		88	0.991528
222	88		11		0.991528
239		10		90	0.90298
447	78		21		1.0
635	9		90		0.999842
817		10		90	0.90298
818	10			90	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain