SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30026

Length: 536 nt

Origin of reads: Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene30026
CGTCGTGACCTTGGCTGTCACTCATTTCCAGAAGAGTATAAGTTGCTGGTACCAAATCTGCTAATTGAGACAATGTCAATGATATCTGCAAGCTTTGTTGCTCGTATTGATGGTGCTCTTGGGGAAGCCTCATTTGGAATAAGGACTTTGACAGGAGGTTTATCAGATTTATCAGCTGGAGAAACGTTAAGAAGCATTGGAATTAAGACTAAACATCTTGAGACATTAATCGAATTGCATAACATGACTGGGGCTTTTGCTAGAAATATTAATCACTTATTTGCAGTTGCTGACATAACAGTTTTGGCAAATACTTTGAGGGCTCTTTATTCACCATATGAGAGTTATAAACAGAGGTATGGCGAATTGGAACATGCAATTCTTTTGGCTGAGATTGCTTCTCTAGACTTGCGAGGAGCTGTTCCTCGTGGTGTGGGTGCTCAAGGAGTTGAGCTTAGTGAGACAGTTAGGAGGATGGAAGAATCTATTCCACAAGTGACCGTCTTACTTGAAGCAGCTGTTGAGAGGTGCATAAG

Ace file of the UniGene sp_v1.1_unigene30026

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Oligomeric golgi complex 7-like n=1 Tax=Oryza sativa Japonica Group RepID=Q655R9_ORYSJ	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	64%
Blast2go	conserved oligomeric golgi complex component 7-related	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	protein retention in Golgi apparatus	GO:0045053	Biological Process	78%
Blast2go	Golgi organization	GO:0007030	Biological Process	78%
Blast2go	shoot morphogenesis	GO:0010016	Biological Process	78%
Blast2go	cell growth	GO:0016049	Biological Process	78%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	78%
Blast2go	meristem structural organization	GO:0009933	Biological Process	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Conserved oligomeric Golgi complex, subunit 7	IPR019335	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9R9S8

Fln msg: Distance to subject end: 368 aas, your sequence is shorter than subject: 178 - 832

Fln protein: RRDLGCHSFPEEYKLLVPNLLIETMSMISASFVARIDGALGEASFGIRTLTGGLSDLSAGETLRSIGIKTKHLETLIELHNMTGAFARNINHLFAVADITVLANTLRALYSPYESYKQRYGELEHAILLAEIASLDLRGAVPRGVGAQGVELSETVRRMEESIPQVTVLLEAAVERCI

Protein Length: 179

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCCAGAAGAGTATAAGTTGCTGGTACCAAATCTGCTAATTGAGACAATGTCAATGATATCTGCAAGCTTTGTTGCTCGTATTGATGGTGCTCTTGGGGAAGCCTCATTTGGAATAAGGACTTTGACAGGAGGTTTATCAGATTTATCAGCTGGAGAAACGTTAAGAAGCATTGGAATTAAGACTAAACATCTTGAGACATTAATCGAATTGCATAACATGACTGGGGCTTTTGCTAGAAATATTAATCACTTATTTGCAGTTGCTGACATAACAGTTTTGGCAAATACTTTGAGGGCTCTTTATTCACCATATGAGAGTTATAAACAGAGGTATGGCGAATTGGAACATGCAATTCTTTTGGCTGAGATTGCTTCTCTAGACTTGCGAGGAGCTGTTCCTCGTGGTGTGGGTGCTCAAGGAGTTGAGCTTAGTGAGACAGTTAGGAGGATGGAAGAATCTATTCCACAAGTGACCGTCTTACTTGAAGCAGCTGTTGAGAGGTGCATAAG

Fln Alignment:

sp_v1.1_unigene30026___SFPEEYKLLVPNLLIETMSMISASFVARIDGALGEASFGIRTLTGGLSDLSAGETLRSIGIKTKHLETLIELHNMTGAFARNINHLFAVADITVLANTLRALYSPYESYKQRYGELEHAILLAEIASLDLRGAVPRGVGAQGVELSETVRRMEESIPQVTVLLEAAVERCI
B9R9S8_______________AFPDDYRSLVPKLLIETMQAVGASFISRINLATGEVIPETKALAKGILDILSGDMPKGIKIQTKHLEALIELHNMTGTFARNIQHLFSESDLRVLLDTLKAVYLPYESFKQRYGQMERAILSSEIAGVDLRGAVTRGVGAQGIELSETVRRMEESIPQVIVLLEAAVERCI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
316	80		20		0.995505

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain