SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30016

Length: 983 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene30016 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chlorophyll a-b binding protein type I, chloroplastic n=10 Tax=Pinaceae RepID=CB21_PINTH	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	chlorophyll a b-binding protein	-	-	94%

Source	InterPros	Term	Type	Identity
Blast2go	Chlorophyll A-B binding protein, plant	IPR001344	-	94%
Blast2go	Chlorophyll A-B binding protein	IPR022796	-	94%
Blast2go	Chlorophyll a/b binding protein domain	IPR023329	-	94%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
112		33		66	0.997461
800		6		93	0.999998
850		96	3		0.987242
872			3	96	0.98536
955		2	98		0.900134
963		1		95	0.999529
965	3		96		0.999947
968	2		97		0.958202
971			3	96	0.980996
972	3	4	1	90	0.999007
976	7	1		91	1.0
977	12			87	1.0
979	5	88			0.999886
981		95		4	0.995881
982		95		4	0.996253
983		93	4	2	0.981371
984	56	43			1.0
985	46	2	4		1.0
988	66			33	0.997461
989		66		33	0.997461
991	33		66		0.997461
992	33	66			0.997461

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain