SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30014

Length: 1285 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene30014 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Med15 multi-domain protein	-	-	5.0e-16	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	nucleic acid binding	-	-	0.0	71%

Source	InterPros	Term	Type	Identity
Blast2go	K Homology domain	IPR004087	-	71%
Blast2go	K Homology domain, type 1	IPR004088	-	71%
Blast2go	K Homology, type 1, subgroup	IPR018111	-	71%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUY9

Fln msg: STOP codon was not found. Distance to subject end: 78 aas, atg_distance in limit (1-15): atg_distance = 2, No stop codon before M and M found is too far from subject M, your sequence is longer than subject: 395 - 357

Fln protein: MQPGSYFGFQTSARKMDVPNAKVGLIIGKAGETIKYLQHQSGAKIQVTRDTDSDPSSMTRQVELMGSLEQINRAEQLINDVIAEADAGGSATLVARGFSSVQPGAEQVQIKVPNNKVGLIIGRGGETIKNLQSRTGARIQLIPLHLPEGDTSTERTVQMTGTKKQIEAAQELINEVVNNETRLRGPPMSGGYGQQGYRAPRPPPQWGPPGPPPMQQAGYGYQQPGPYPGPPQHYMSQPYGGYPQQASGGYATGWDQRPPAPAQQPQQSGGYDYYGQQGQAGAAPNSGNYGYGQPQAGGYGQVGSYGQQGYSQQGYGQEGYGQPVNTQQGYEQPGYSNPAYGAPGAPQSGPPQAGTPQQDASQGYSYSQPHDQSASHGYTQAQHYTTESELPYSSA

Protein Length: 396

Fln nts: CTCATCGACCACCATCGTGCTCAAACCGATAATGTTTTTGCACAAAAGCCTCAGACCCAGTCTATTGGGAATTTGCAACATGGTGATGTTGCTTCGTCAATGCAACCAGGTTCATATTTTGGTTTTCAGACATCTGCTCGAAAAATGGATGTTCCCAATGCCAAAGTTGGCCTTATAATTGGTAAAGCTGGAGAAACTATTAAGTATCTTCAACATCAATCAGGTGCAAAAATTCAAGTAACTAGGGATACAGATTCTGATCCAAGTTCTATGACTAGGCAAGTGGAGTTGATGGGCAGCTTGGAGCAAATCAATAGGGCAGAGCAGCTGATCAATGATGTCATTGCAGAGGCAGATGCAGGTGGCTCAGCTACACTTGTTGCACGAGGTTTCAGCAGTGTGCAACCTGGAGCAGAACAAGTGCAAATAAAAGTTCCAAACAATAAGGTTGGGCTGATCATTGGTAGAGGAGGTGAGACTATAAAGAATCTGCAAAGCAGGACAGGGGCTCGAATCCAGTTAATACCACTACATCTTCCTGAGGGAGATACATCAACAGAAAGGACAGTGCAGATGACTGGCACCAAGAAGCAAATTGAAGCAGCCCAAGAACTGATCAATGAAGTTGTTAATAATGAGACTCGTTTAAGAGGTCCACCCATGTCTGGTGGTTATGGCCAGCAGGGTTATCGAGCGCCTCGACCTCCACCACAGTGGGGCCCTCCTGGTCCACCTCCAATGCAGCAAGCAGGTTATGGGTATCAGCAACCTGGACCTTACCCAGGTCCACCTCAGCACTATATGTCACAGCCATATGGTGGATATCCCCAGCAAGCCTCAGGTGGCTATGCTACTGGGTGGGATCAAAGGCCACCTGCACCGGCACAGCAACCTCAGCAAAGTGGAGGTTATGATTACTATGGACAGCAGGGCCAGGCAGGTGCAGCTCCGAACAGTGGAAACTATGGTTATGGGCAGCCACAGGCTGGAGGATATGGACAGGTAGGATCATATGGACAGCAGGGTTACTCTCAACAAGGTTATGGACAGGAAGGATATGGGCAACCAGTAAATACACAGCAAGGATATGAACAGCCAGGTTACAGTAACCCGGCTTATGGTGCCCCAGGAGCTCCACAGTCTGGACCTCCACAAGCAGGTACTCCTCAACAGGATGCTTCACAGGGCTATAGCTATAGTCAACCACATGATCAATCGGCCAGTCATGGATATACACAAGCACAACATTACACAACTGAAAGCGAGCTCCCATATTCAAGTGCAC

Fln Alignment:

sp_v1.1_unigene30014___TSARKMDVPNAKVGLIIGKAGETIKYLQHQSGAKIQVTRDTDSDPSSMTRQVELMGSLEQINRAEQLI-NDVIAEADAGGSATLVARGFSSVQPGAEQVQIKVPNNKVGLIIGRGGETIKNLQSRTGARIQLIPLH--LPEGDTSTERTVQMTGT-KKQIEAAQELINEVVN--NETRLRGPPMS-------------GGYGQQGY
A9NUY9_______________SSCLRLLVSNAAAGSVIGKGGATVSDFQTQSGARIQLSRNHEFFPGTTDRIILVTGSINEILTAANLILQKLLSEAEDN----------NDVDEKTSQVRLVLPNSVCGGIIGKGGATIKSFVEHSQASIKLSSQDQILP---GVSDRLVTITGTLEQQLRAIFLIVSKLAEDPNYAQYANAPLSYTGGSVAGIQGIPGGYTPVGY

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1170	89			10	0.999919
1171			10	89	0.999919
1182	10			89	0.999919
1192		12		87	0.999964
1261	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain