SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene30011

Length: 532 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene30011
GAAGCTATTAATGGTCAATGCAGTGATGCATTGGTAGCTGAAGAGCAACCCTCGAAATCTAGTTACGCTGAACAAAGAGAAGCTGGCAAGCCTAATGTTGATGAAATTTCAGAGGGTGCAATTGTTCCTTATAAGCCAAAAAGACAGTCCGATGGAATTGAGCCTGCACATGGAGAAAATTCCAAAGCATGCTTGCTCAGAGTTTTGGAGACACGGAAGATGGTGCTGCAAAAAGAACAAGGAATGGCCTTTGCTCGAGCTGCAGCTGCTAGTTTTGACATGGATCACATGCATGATTTAGTTTCATTTGCAGATTGCTTTGGGGCTTTCCGCCTGAGAGAGGCATGTGTAAATTTTATGGGCTTGTGGAAGAAAAAGCAAGAAGCTGGAATCTGGTTGGAAGAAATGGAATTAGAAACTATGGAAGCTTCTTCAACTCGATCTGAGATAGGTTTGATAAATGCTTCTGGGATTACATTGAACAGTGACACTGATGTTCAATGTAATCCCAGAAGCATTTATCAACTCGATC

Ace file of the UniGene sp_v1.1_unigene30011 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	54%
Blast2go	cop1-interacting protein	-	-	6.6571e-28	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SS63

Fln msg: Distance to subject end: 998 aas, your sequence is shorter than subject: 177 - 1280

Fln protein: EAINGQCSDALVAEEQPSKSSYAEQREAGKPNVDEISEGAIVPYKPKRQSDGIEPAHGENSKACLLRVLETRKMVLQKEQGMAFARAAAASFDMDHMHDLVSFADCFGAFRLREACVNFMGLWKKKQEAGIWLEEMELETMEASSTRSEIGLINASGITLNSDTDVQCNPRSIYQLD

Protein Length: 178

Fln nts: GAAGCTATTAATGGTCAATGCAGTGATGCATTGGTAGCTGAAGAGCAACCCTCGAAATCTAGTTACGCTGAACAAAGAGAAGCTGGCAAGCCTAATGTTGATGAAATTTCAGAGGGTGCAATTGTTCCTTATAAGCCAAAAAGACAGTCCGATGGAATTGAGCCTGCACATGGAGAAAATTCCAAAGCATGCTTGCTCAGAGTTTTGGAGACACGGAAGATGGTGCTGCAAAAAGAACAAGGAATGGCCTTTGCTCGAGCTGCAGCTGCTAGTTTTGACATGGATCACATGCATGATTTAGTTTCATTTGCAGATTGCTTTGGGGCTTTCCGCCTGAGAGAGGCATGTGTAAATTTTATGGGCTTGTGGAAGAAAAAGCAAGAAGCTGGAATCTGGTTGGAAGAAATGGAATTAGAAACTATGGAAGCTTCTTCAACTCGATCTGAGATAGGTTTGATAAATGCTTCTGGGATTACATTGAACAGTGACACTGATGTTCAATGTAATCCCAGAAGCATTTATCAACTCGATC

Fln Alignment:

sp_v1.1_unigene30011___EAGKPNVDEISEGAIVPYKPKR---QSDGIEPAHGENSKACLLRVLETRKMVLQKEQGMXXXXXXXASFDMDHMHDLVSFADCFGAFRLREACVNFMGLWKKKQEAGIWLEEMELETMEASSTRSEIGLINASGITLNSDTDVQ
B9SS63_______________EGSKALLDSNEEKAIVLYKPGSHPLEANG-SAAHEGNSKVQLMKVLETRKTVLQKEQGMAFARAVAAGYDIDHMAPLMSFAESFGATRLMDACVRFMDLWKRKHETGQW---VEIEAAEAMSSRSDFAVMNASGIVLSSATNKQ

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
289	16	83			0.994512
293			16	83	0.994512
300			16	83	0.994512
304		16		83	0.994515
305			16	83	0.994515
306	16			83	0.994515
309	83			16	0.994512
322		16	83		0.994513
323		16		83	0.994513
324	16		83		0.994513
335		50		50	1.0
387	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain