SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29974

Length: 1113 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29974

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein disulfide oxidoreductase, putative	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	dsba oxidoreductase family protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	0.0	74%

Source	InterPros	Term	Type	Identity
Blast2go	DSBA-like thioredoxin domain	IPR001853	-	74%
Blast2go	Thioredoxin fold	IPR012335	-	74%
Blast2go	Thioredoxin-like fold	IPR012336	-	74%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYS1

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 224 - 256

Fln protein: MSSVGSPSVMKKLIRIDVTSDTICPWCFVGKKNLEKAMDATKDLYNFEVKWHPFMLDPSLPKEGLDKNEFHRKKFGSRAQTLINTVDQAFQGVGYRFGSGGLIGNTLDSHRLIELAGRQGLDKQNALVDSLMIQCSTQEKYIGDREVLLAAAKSAGIDGAEEWIDNPNSGLLEIQVEMEKNAQNISGVPHFLINNKYQQTGAQAPDSFIQTFKRAARDAEGNC*

Protein Length: 225

Fln nts: ATGGGACAATTGGGTGGGTTGTCAATTACGTCGCTCCCCGTCAATGCTATGTCTGTGGGCTCAGTTTTCATGAGATTTCAACAACGATCGAGGTTCCTAAATTTTTGTCCAGCATCTACAGATTGTGATTTAGCATCAGTCTGATTATCATCGTATTCCACATACATTTACTTTTGCAGGACA_-_ATGAGTTCAGTAGGCTCTCCCTCTGTTATGAAGAAATTGATTAGAATTGATGTCACTTCGGATACCATCTGCCCATGGTGCTTCGTTGGGAAGAAAAACTTGGAGAAAGCCATGGATGCTACCAAGGATCTCTACAACTTCGAGGTGAAGTGGCATCCTTTCATGCTTGATCCTAGTCTTCCCAAGGAAGGTCTGGATAAGAATGAATTTCATAGAAAGAAATTTGGGTCACGTGCCCAAACGTTGATAAACACTGTAGACCAGGCTTTTCAGGGCGTGGGATATCGCTTTGGAAGTGGTGGTTTAATAGGGAATACATTGGATAGTCACAGATTGATTGAGTTAGCTGGTCGTCAAGGATTGGATAAGCAGAATGCACTTGTGGATAGCCTTATGATTCAATGCTCGACACAGGAGAAGTACATTGGTGATAGAGAGGTGCTTCTGGCTGCTGCAAAGAGTGCAGGCATTGATGGTGCTGAAGAATGGATTGATAACCCAAATTCTGGTTTGCTAGAGATACAAGTTGAAATGGAAAAAAATGCTCAGAACATATCTGGTGTACCTCATTTTCTGATAAATAACAAGTATCAACAAACAGGTGCGCAAGCTCCAGATTCATTCATTCAGACTTTTAAAAGAGCTGCTCGTGATGCAGAAGGAAATTGTTGAGCTTGAATCATGTTAAGAGACACCTACTTGTCATTTTATACAAATACATATATGCAATGCTTGCGCACAATTTGGAATACTTCAGTAGTGAACTGGTTTTCGGTATGCTTTTGCTTAGATTGCACAGTTACAATAGATAAATAACAAGATAAAACAGGTGTGCAAGCTCCAGATTCATTCATTCAGACTTTTAAAAGAGCGCTCATGACGCAGAAGGAAATTGTTGAGCTTGAATCATGTTAAGGACACCTACTTGTC

Fln Alignment:

sp_v1.1_unigene29974___KKLIRIDVTSDTICPWCFVGKKNLEKAMDATKDLYNFEVKWHPFMLDPSLPKEGLDKNEFHRKKFGSR-AQTLINTVDQAFQGVGYRFGSGGLIGNTLDSHRLIELAGRQGLDKQNALVDSLMIQCSTQEKYIGDREVLLAAAKSAGIDGAEEWIDNPNSGLLEIQVEMEKNAQNISGVPHFLINNKYQQTGAQAPDSFIQTFKRAARDAEGN
A9NYS1_______________KKLITVDITSDTVCPWCFIGKRHLNKAMDASKDLYNFRVRWHPFLLNPSAPKEGIEKTVYWKQKFGDENVEPIISRVSKACQVVGIDFKSGGLTGNTLDSHRLIAFASQQGLEKQNALVEELFLNYFTQQKYIGDRKVLLEAAEKVGITGAKEWLDDPNNGLKEINEELQIYARSVTGVPHFLINGQYKLHGAQQSETFLKAFQVAATDDKAN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
754		10		90	0.90298
804	40		60		1.0
936	16		83		0.994512
959	20		80		0.995493
960	25			75	0.996473
965		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain