SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29953

Length: 517 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene29953
ATGGGGCCATAAACAATAGCAGTGGATTCACAGAGGTAGTGAAATATCTTTTGGACCATGGAGCAGACATGAATAAAACAGACAGCAGTGGTTGGACACCAAGGGCCTTGGCAGAGCACCAAGGGCATGACGAAATACTGCAATTACTCCAAGAAAAATCCCAGTCAACAGATTCACACTTACGTTTACGTACTGAAAATGTATATGTTCCATTGAGCCTACACGAGGAAAACCATAGGGAGATTACCAATTCTTCGGGATATGCAGAAGAAAACGGCATTCATCAATCTGTAAATGCAATTTCCACCCGATCTACTGGAACACAAAGGAGTAGAAGAGTGGATAATTTTGAAAATACTCTTTTTGGTATACTCAGAATGCATTCTAAGAGTAACCTCAGTGTTTGTGTCTCGAGTTCTGACTCAACTAAATGCTCGCAGGCAAGCCCTTCTCTTCCTTGTAGAGTCACAGTCTATAGGCATCACCCAACAGACGAGAAAACAAAGAAGCAACCAGG

Ace file of the UniGene sp_v1.1_unigene29953

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Potassium channel AKT1 n=2 Tax=Arabidopsis thaliana RepID=AKT1_ARATH	-	-	2.0e-10	35%
FL-Next	sp=Potassium channel AKT1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	39%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ankyrin repeat-containing domain	IPR020683	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38998

Fln msg: Distance to subject end: 42 aas, your sequence is shorter than subject: 171 - 857

Fln protein: GAINNSSGFTEVVKYLLDHGADMNKTDSSGWTPRALAEHQGHDEILQLLQEKSQSTDSHLRLRTENVYVPLSLHEENHREITNSSGYAEENGIHQSVNAISTRSTGTQRSRRVDNFENTLFGILRMHSKSNLSVCVSSSDSTKCSQASPSLPCRVTVYRHHPTDEKTKKQP

Protein Length: 172

Fln nts: ATGGGGCCATAAACAATAGCAGTGGATTCACAGAGGTAGTGAAATATCTTTTGGACCATGGAGCAGACATGAATAAAACAGACAGCAGTGGTTGGACACCAAGGGCCTTGGCAGAGCACCAAGGGCATGACGAAATACTGCAATTACTCCAAGAAAAATCCCAGTCAACAGATTCACACTTACGTTTACGTACTGAAAATGTATATGTTCCATTGAGCCTACACGAGGAAAACCATAGGGAGATTACCAATTCTTCGGGATATGCAGAAGAAAACGGCATTCATCAATCTGTAAATGCAATTTCCACCCGATCTACTGGAACACAAAGGAGTAGAAGAGTGGATAATTTTGAAAATACTCTTTTTGGTATACTCAGAATGCATTCTAAGAGTAACCTCAGTGTTTGTGTCTCGAGTTCTGACTCAACTAAATGCTCGCAGGCAAGCCCTTCTCTTCCTTGTAGAGTCACAGTCTATAGGCATCACCCAACAGACGAGAAAACAAAGAAGCAACCAGG

Fln Alignment:

sp_v1.1_unigene29953___EVVKYLLDHGADMNKTDSSGWTPRALAEHQGHDEILQLLQEKSQSTDSHLRLRTENVYVPLSLHEENHREITNSSGYAEENGIHQSVNAIXXXXXXXXXXXXVDNFENTLFGIL
Q38998_______________EMVKYLLEQGADVNKQDMHGWTPRDLAEQQGHEDIKALFREKLHERRVHIETSSS---VPIL-----KTGIRFLGRFTSEPNIRPASREVSFRIRETRARRKTNNFDNSLFGIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain