SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29948

Length: 738 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene29948 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-1,3-n-acetylglucosaminyltransferase radical fringe, putative n=1 Tax=Ricinus communis RepID=B9RZ00_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	glycosyltransferase-like protein	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF604	IPR006740	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPP2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 135 aas, your sequence is shorter than subject: 164 - 512

Test code: 0

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: RRDLGCHSVSDEDLSLPPIRVSEDTSRFSYTNPDGHPSGVRIARIIQESFALGLPDVKWFVLADDDTVFNVDNLIAVLSKYNPSEMYYIGSASESHSANTYFSHSMAYGGGGIAISYPLAEELSNMQDECLERYPQLFGSDDRLHACILSSVFLLLENQDSIR*

Protein Length: 165

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTCCGATGAAGACCTCAGTTTGCCCCCAATTAGGGTTTCTGAGGATACCTCTAGGTTTTCATACACAAACCCGGATGGGCACCCTTCTGGGGTCAGGATTGCCAGGATTATTCAGGAGAGTTTTGCGCTTGGGTTGCCTGATGTCAAGTGGTTTGTGTTGGCTGATGATGATACTGTCTTCAATGTTGATAATTTGATTGCTGTTTTAAGTAAATATAACCCTTCGGAGATGTATTACATTGGGAGTGCGTCCGAGAGTCATTCGGCGAATACTTATTTTAGCCATTCCATGGCTTATGGTGGTGGGGGAATTGCTATCAGTTATCCTTTGGCAGAGGAACTTTCTAATATGCAGGATGAATGCTTGGAGCGGTATCCGCAATTGTTTGGAAGTGACGACCGGCTCCATGCTTGTATTCTGAGCTCGGTGTTCCTCTTACTCGAGAACCAGGATTCCATCAGGTAATTTTCAATCTCTTTCTTTAAAAGAAATTTGACTTATGTAAACATGCTAAAGTACATGAAAAAATACATCATATATTCATACATCAGCAGGCCATGACGTGTTGATTGCCCCTACCTACAGAGGCAAAGAGGGCCTGTATATCTGCTTTGACTCTGATTTTAAGAGAGTATTACCTTTTCTAAATAGCCCTATGGTAGCTGAACAGTGTATTGCTAGATCAAATTTCAATCCTAAGAGTTCACCCAT

Fln Alignment:

sp_v1.1_unigene29948___VSDEDLSLPPIRVSEDTSRFSYTNPDGHPSGVRIARIIQESFALGLPDVKWFVLADDDTVFNVDNLIAVLSKYNPSEMYYIGSASESHSANTYFSHSMAYGGGGIAISYPLAEELSNMQDECLERYPQLFGSDDRLHACI
B8LPP2_______________IADPSEPLPPIKLSDDTSRFSYTNPTGHPSGVRIARIVQETFKLRLQNVRWFVLGDDDTIFNAHNLMKVLSKYDPSEMHYIGSSSESHSANTHFSHSMAFGGGGIAISYPLAEALNNMEDACLQRYSHLFGSDDRLHACI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
708			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain