SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29924

Length: 451 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene29924
GCGTTCCTATTTTCTGTTTTCCATGGTACCCACTTGTGCAAACCAAACAGTTTTATAATTCCCTCGTGCTTTGGTGGTGTTTGACAGCTTACCTTGTCTGGCAGTGTCTGACAGATTTTGTAGTCGTGGTCGTTACCTTGGCTTTCTTTCATCTTTGGAACCCAGCAGATATCATTATATCTGAGCTCCACTCCTCAATTCACTCCAGCAAGCCCTATCTACCTGATTTGGAACAAATTGTCCGTGGAAATCCAGAAAAGAATATTCGTGCTGGTATTTGCAGAAGTGTGTGTGAAACTGTACAGGAACAAGTGGACTGTCTAATTGATCAGGCTACAGATCCTAATTTGCTTGGTCGGATTTGGGTTGGATGGCAACCTTGGCTTTGACATTCAAGAGATATACTGTTTCATGTTTATGTTGTATGCAGTTGCACCTCAAGGGACACACC

Ace file of the UniGene sp_v1.1_unigene29924

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dnapkcs; DNA-dependent protein kinase subunit; K06642 DNA-dependent protein kinase catalytic subunit [EC:2.7.11.1]	-	-	5.0e-12	57%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	66%
Blast2go	dna-dependent protein kinase subunit	-	-	2.48908e-20	76%

Source	ECs	Term	Type	e value	Identity
AutoFact	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	5.0e-12	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PIK-related kinase, FATC	IPR003152	-	2.48908e-20	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9SH90

Fln msg: your sequence is shorter than subject: 129 - 4165

Fln protein: VPIFCFPWYPLVQTKQFYNSLVLWWCLTAYLVWQCLTDFVVVVVTLAFFHLWNPADIIISELHSSIHSSKPYLPDLEQIVRGNPEKNIRAGICRSVCETVQEQVDCLIDQATDPNLLGRIWVGWQPWL*

Protein Length: 130

Fln nts: GCGTTCCTATTTTCTGTTTTCCATGGTACCCACTTGTGCAAACCAAACAGTTTTATAATTCCCTCGTGCTTTGGTGGTGTTTGACAGCTTACCTTGTCTGGCAGTGTCTGACAGATTTTGTAGTCGTGGTCGTTACCTTGGCTTTCTTTCATCTTTGGAACCCAGCAGATATCATTATATCTGAGCTCCACTCCTCAATTCACTCCAGCAAGCCCTATCTACCTGATTTGGAACAAATTGTCCGTGGAAATCCAGAAAAGAATATTCGTGCTGGTATTTGCAGAAGTGTGTGTGAAACTGTACAGGAACAAGTGGACTGTCTAATTGATCAGGCTACAGATCCTAATTTGCTTGGTCGGATTTGGGTTGGATGGCAACCTTGGCTTTGA___CATTCAAGAGATATACTGTTTCATGTTTATGTTGTATGCAGTTGCACCTCAAGGGACACACC

Fln Alignment:

sp_v1.1_unigene29924___LWNPADXXXXXXXXXXXXXKPYLPDLEQIVRGNPEKNIRAGICRSVCETVQEQVDCLIDQATDPNLLGRIWVGWQPWL
A9SH90_______________LWNPAEITISELGFSVHANKPYTRALEEIVRGDPSRNIRARVAGNVCVSVQEQIDCLLDQATDPNLLGRIFAGWQPWV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
244	16			83	0.994515

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain