SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29889

Length: 1973 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene29889
ATGGGGATGCCAGTTTCAATGTTTACATAGTGACAGTGAACCATATTCGTTACATAGGTGTTACTTCGCTTGCAACAATGTCATTGCAATCAGTGTGTCCATCTTCAGCCAGGCTTCTTTTCATATTCTTGCTGATTGCGTATTTGGCTGCCTTCGCAAACGCAGATATCCACAAATATACATTCGTTCTTGAAAAGACGACAGTTACTAGGCTATGCAAGGAGCGTATAATAGCCACAGTCAATGGACAGCTACCAGGTCCAACGATTCATGTACGTGACGGGGACACTGTTGTTGTGGAAACTTATAACAAGGCTGAGTACAATGCTACTCTTCACTGGCATGGAGTGGAGCAGTTGCGTACGGCATGGGCTGATGGACCTGCATATGTTACACAATGCCCAATTCCACCAGGTGGTCGTTACACATACAGATTCAACATCTCTGGACAAGAAGGAACCGTGTGGTGGCATGCCCATTACTCATGGCTCCGAGCTACTGTGCATGGAGCTTTTGTAATCCTTCCTAAGAAAGGAAGCTCATATCCCTTTTCTAAACCCCATGCCGAAATTCCTATTGTAATAGGCGAATGGTGGAACGCTAACCCCATCGCCGTTATAGACGAAGCGGTTCGCACAGGTGGTGCGCCTAATTTATCCGATGCCTTCACCATAAATGGACAGCCAGGAGATCTGTTTAACTGCTCTACCTCGGGAACATTTCGCCTCCCTGTAAAAAGCGGAGAAACGTACCTTCTGCGTATCGTGAATGCTGCACTCAATAGCGGGCACTTTTTCAAGATAGCAGGACACAAAATTACGGTTGTAGCTGTGGATGCTTGCTACACCAAACCATACAAAACAGATATACTTGTCATCTCTGCCGGCCAGACTACAGATGTTCTTATAACGGCCAACCAGCCTGTGGGCAAATACTATATGGCCGCCCGAGCATATAACAATCAGGCAGCGGGCGATTTCGATAACACCACTGCTACTGCCATTCTAGAATATATTGGAGCTCAAAATTCTACGAGTCCAATTTTGCCTAGCCTTCCAGCCTACAACGACACTGATACAGTCACTATATTTAGCAGAGCACTGAGAAGCTTGGCTTCCCAAGAACACCCAGTGGATGTTCCGCAAACTATAGATAAAAGCCTCATCTCCACAGTTGGACTGGGGTTGCTTCCCTGTGAAACTGGAAACACCTGTGAAGGCCCCAACGGAACGCGGCTGAGTGCAAGTATGAACAACATATCGTTCGTAGATCCTACGATCTCGCTGCTTCAAGCTTATTATTTCAACATCAGTGATGTCTATATGACGGATTTTCCATCAAAACCTCCAGTTAGATTCAACTACACGGGGGACGATATACCGCGAAAATTTTGGATTCCTCATCCGGCAACAAAAGTGAAAGTGCTGGAATACAACTCCACAGTGCAGCTCGTCTTTCAGTCAACAAACATCTTCGTGGCAGAGAACCATCCAATGCATCTTCATGGTTATAACTTTTACTTGGTGGGAGATGGCTACGGGAACTATAACCCAGACACCGACCAGCAAAAGTTTAATCTGGTCGATCCTCCACTGCGCAACACAGTAATCGCTCCAGTCAGCGGGTGGGTTGCCATAAGATTCAAAGCAAGCAATCCAGGAATGTGGTTTTTGCACTGCCATTTGGACGACCATTTCACGTGGGGATTGAATATGGTGTTTCTAGTGAAGAACGGTGGCACTCCTTCCTCAACAATAGAGCCCCCACCTGCATACCTCCCCGCGTGCTAGGGAATGAACAAAAGTGATCAGGCGAAAAGGCATCCTGTGGCTGTCATCAGTGCTTTCCACTAAGTAAGATTTTATAATATAGTATTATCAGTTATCTCGTGGTAATCAAATCAGGTGTGACATTCTAAATAAGCTGTCAATTATTGAGCAAAATTTACCGTTGTATCGATGCAAGCGCTCCGA

Ace file of the UniGene sp_v1.1_unigene29889

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	laccase 90c	-	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg:

Fln protein: MSLQSVCPSSARLLFIFLLIAYLAAFANADIHKYTFVLEKTTVTRLCKERIIATVNGQLPGPTIHVRDGDTVVVETYNKAEYNATLHWHGVEQLRTAWADGPAYVTQCPIPPGGRYTYRFNISGQEGTVWWHAHYSWLRATVHGAFVILPKKGSSYPFSKPHAEIPIVIGEWWNANPIAVIDEAVRTGGAPNLSDAFTINGQPGDLFNCSTSGTFRLPVKSGETYLLRIVNAALNSGHFFKIAGHKITVVAVDACYTKPYKTDILVISAGQTTDVLITANQPVGKYYMAARAYNNQAAGDFDNTTATAILEYIGAQNSTSPILPSLPAYNDTDTVTIFSRALRSLASQEHPVDVPQTIDKSLISTVGLGLLPCETGNTCEGPNGTRLSASMNNISFVDPTISLLQAYYFNISDVYMTDFPSKPPVRFNYTGDDIPRKFWIPHPATKVKVLEYNSTVQLVFQSTNIFVAENHPMHLHGYNFYLVGDGYGNYNPDTDQQKFNLVDPPLRNTVIAPVSGWVAIRFKASNPGMWFLHCHLDDHFTWGLNMVFLVKNGGTPSSTIEPPPAYLPAC*

Protein Length: 572

Fln nts: ATGGGGATGCCAGTTTCAATGTTTACATAGTGACAGTGAACCATATTCGTTACATAGGTGTTACTTCGCTTGCAACA_-_ATGTCATTGCAATCAGTGTGTCCATCTTCAGCCAGGCTTCTTTTCATATTCTTGCTGATTGCGTATTTGGCTGCCTTCGCAAACGCAGATATCCACAAATATACATTCGTTCTTGAAAAGACGACAGTTACTAGGCTATGCAAGGAGCGTATAATAGCCACAGTCAATGGACAGCTACCAGGTCCAACGATTCATGTACGTGACGGGGACACTGTTGTTGTGGAAACTTATAACAAGGCTGAGTACAATGCTACTCTTCACTGGCATGGAGTGGAGCAGTTGCGTACGGCATGGGCTGATGGACCTGCATATGTTACACAATGCCCAATTCCACCAGGTGGTCGTTACACATACAGATTCAACATCTCTGGACAAGAAGGAACCGTGTGGTGGCATGCCCATTACTCATGGCTCCGAGCTACTGTGCATGGAGCTTTTGTAATCCTTCCTAAGAAAGGAAGCTCATATCCCTTTTCTAAACCCCATGCCGAAATTCCTATTGTAATAGGCGAATGGTGGAACGCTAACCCCATCGCCGTTATAGACGAAGCGGTTCGCACAGGTGGTGCGCCTAATTTATCCGATGCCTTCACCATAAATGGACAGCCAGGAGATCTGTTTAACTGCTCTACCTCGGGAACATTTCGCCTCCCTGTAAAAAGCGGAGAAACGTACCTTCTGCGTATCGTGAATGCTGCACTCAATAGCGGGCACTTTTTCAAGATAGCAGGACACAAAATTACGGTTGTAGCTGTGGATGCTTGCTACACCAAACCATACAAAACAGATATACTTGTCATCTCTGCCGGCCAGACTACAGATGTTCTTATAACGGCCAACCAGCCTGTGGGCAAATACTATATGGCCGCCCGAGCATATAACAATCAGGCAGCGGGCGATTTCGATAACACCACTGCTACTGCCATTCTAGAATATATTGGAGCTCAAAATTCTACGAGTCCAATTTTGCCTAGCCTTCCAGCCTACAACGACACTGATACAGTCACTATATTTAGCAGAGCACTGAGAAGCTTGGCTTCCCAAGAACACCCAGTGGATGTTCCGCAAACTATAGATAAAAGCCTCATCTCCACAGTTGGACTGGGGTTGCTTCCCTGTGAAACTGGAAACACCTGTGAAGGCCCCAACGGAACGCGGCTGAGTGCAAGTATGAACAACATATCGTTCGTAGATCCTACGATCTCGCTGCTTCAAGCTTATTATTTCAACATCAGTGATGTCTATATGACGGATTTTCCATCAAAACCTCCAGTTAGATTCAACTACACGGGGGACGATATACCGCGAAAATTTTGGATTCCTCATCCGGCAACAAAAGTGAAAGTGCTGGAATACAACTCCACAGTGCAGCTCGTCTTTCAGTCAACAAACATCTTCGTGGCAGAGAACCATCCAATGCATCTTCATGGTTATAACTTTTACTTGGTGGGAGATGGCTACGGGAACTATAACCCAGACACCGACCAGCAAAAGTTTAATCTGGTCGATCCTCCACTGCGCAACACAGTAATCGCTCCAGTCAGCGGGTGGGTTGCCATAAGATTCAAAGCAAGCAATCCAGGAATGTGGTTTTTGCACTGCCATTTGGACGACCATTTCACGTGGGGATTGAATATGGTGTTTCTAGTGAAGAACGGTGGCACTCCTTCCTCAACAATAGAGCCCCCACCTGCATACCTCCCCGCGTGCTAG___GGAATGAACAAAAGTGATCAGGCGAAAAGGCATCCTGTGGCTGTCATCAGTGCTTTCCACTAAGTAAGATTTTATAATATAGTATTATCAGTTATCTCGTGGTAATCAAATCAGGTGTGACATTCTAAATAAGCTGTCAATTATTGAGCAAAATTTACCGTTGTATCGATGCAAGCGCTCCGA

Fln Alignment:

sp_v1.1_unigene29889___MSLQSVCPSSARXXXXXXXXXXXXXXXXXXXHKYTFVLEKTTVTRLCKERIIATVNGQLPGPTIHVRDGDTVVVETYNKAEYNATLHWHGVEQLRTAWADGPAYVTQCPIPPGGRYTYRFNISGQEGTVWWHAHYSWLRATVHGAFVILPKKGSSYPFSKPHAEIPIVIGEWWNANPIAVIDEAVRTGGAPNLSDAFTINGQPGDLFNCSTSGTFRLPVKSGETYLLRIVNAALNSGHFFKIAGHKITVVAVDACYTKPYKTDILVISAGQTTDVLITANQPVGKYYMAARAYNNQAAGDFDNTTATAILEYIGAQNSTSPILPSLPAYNDTDTVTIFSRALRSLASQEHPVDVPQTIDKSLISTVGLGLLPCETGNTCEGPNGTRLSASMNNISFVDPTISLLQAYYFNISDVYMTDFPSKPPVRFNYTGDDIPRKFWIPHPATKVKVLEYNSTVQLVFQSTNIFVAENHPMHLHGYNFYLVGDGYGNYNPDTDQQKFNLVDPPLRNTVIAPVSGWVAIRFKASNPGMWFLHCHLDDHFTWGLNMVFLVKNGGTPSSTIEPPPAYLPAC
C0PRA7_______________MSLPSVRLSSAALVFLFTFAAYLAAIINAEIHHYTFVIERTIVTRLCKNYTIVTVNGQLPGPTIHVHNGDTVIVKAYNRAQHNATLHWHGVKQLRTGWADGPAYITQCPIPPGGHYTQRFTITGQEGTLWWHSHISWLRATVHGAIVILPQRGSLYPFPKPRAEIPIIIGEWWNKDPITVINQAILTGGAPNLSDAFTINGQPGDLYPCSTSETFRLPVKRGETYLLRIVNAALNTGHFFKIARHKFTVVAVDASYTKPYKTDVIVISAGQTTDVLVTADQPVGKYYMAARPYNNQAAGAFDNTTTTAIIEYIGYQNSTRPIFPKLPFYNDTPVVTKFSKALRSLASPEHPVEVPQTVHKSFISTVGLGLLPCETGNTCEGPNGTRLSASMNNVSFVDPTIAILQANYFGINGVFSTDFPSKPPHKFNYTGDDIPRNLWFPLPATKVKVLNYNATVQLVFQSTNIFVAENHPMHLHGYNFYVIGEGFGNYNPKTDPLKFNLVDPPERNTVIAPVSGWVAIRFKADNPGVWFLHCHLDDHLVWGLNMVFIVKNGHGPLATLEPPPKDLPPC

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
622		78	21		1.0
637		21	78		1.0
638	21		78		1.0
658		21		78	1.0
662	21			78	1.0
675	23			76	1.0
733		66	33		1.0
737		57		42	1.0
748		83		16	0.994512
752		50	50		1.0
757	40		60		1.0
764		20		80	0.995493
774			40	60	1.0
778		60		40	1.0
823	80	20			0.995493
828	80		20		0.995493
831	80			20	0.995493
833		20		80	0.995493
836	40		60		1.0
839	20		20	60	0.99255
902		75		25	0.996473
995		80	20		0.995494
996			80	20	0.995494
1026	75	25			0.996473
1256			80	20	0.995493
1257			20	80	0.995493
1259		80	20		0.995493
1290		25		75	1.0
1331	75		25		1.0
1363		71	28		1.0
1368	28			71	1.0
1386	33		66		1.0
1417		66	33		1.0
1449	85		14		0.993533
1450		85	14		0.993533
1471		66		33	1.0
1528		50		50	1.0
1583	40	60			1.0
1655	84	15			0.999986
1662	84		15		0.999986
1668	15		84		0.999986
1688		18		81	0.999994
1754		10	90		0.90298
1755	10		90		0.90298
1759	90		10		0.90298
1760		90	10		0.90298
1766		90		10	0.90298
1767		90	10		0.90298
1768			10	90	0.90298
1786	80			20	0.995493
1874		25	75		0.996473
1900	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain