SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29876

Length: 527 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene29876
TCAAGGTCATCTTGTCAGCATCACCAATCAGAATGATATTCAGATATGGGATTTGGATGGACGGGCACTAGCCTGTTATATCCAGTGGGAAACGAACATTACTGCTTTTGCTGTTATTCAGGGAACTTCTTACATGTATATTGGGGATGACTTGGGCAATGTAGCTGTTGTCAAATATGATCACGAGAACGCAGAGCTCTCTGAGATGCCCTACAATATTCCCATGCACATTATACAAGAAGCATCAAACCATTTGGATTCTTTTCCCTCTTCTGTTGTTGAAGTTCTCCCACAACCCTCTGCTTCTGACAGCAGGGTTCTTATTGCATATGCAAATGGGTTGATTATTCTATGGGACATTTATGAAGCTCATGTGGTTGCAGTCAGAGGTTGTTCAAATCTTCAACCCAAGAATAGTAATGCAGCCAGTTCTCCAAATGGCACAGGAGATGAAACATCTAGGCTAGATACAAATGACGATAACGAAGAGAAAGAAATTTGCTGTGCATGCTGGGCATCTGCAGATG

Ace file of the UniGene sp_v1.1_unigene29876

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	47%
Blast2go	nucleotide binding	-	-	3.49484e-42	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.49484e-42	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	3.49484e-42	62%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	3.49484e-42	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HCC0

Fln msg: Distance to subject end: 842 aas, your sequence is shorter than subject: 175 - 1108

Fln protein: QGHLVSITNQNDIQIWDLDGRALACYIQWETNITAFAVIQGTSYMYIGDDLGNVAVVKYDHENAELSEMPYNIPMHIIQEASNHLDSFPSSVVEVLPQPSASDSRVLIAYANGLIILWDIYEAHVVAVRGCSNLQPKNSNAASSPNGTGDETSRLDTNDDNEEKEICCACWASAD

Protein Length: 176

Fln nts: TCAAGGTCATCTTGTCAGCATCACCAATCAGAATGATATTCAGATATGGGATTTGGATGGACGGGCACTAGCCTGTTATATCCAGTGGGAAACGAACATTACTGCTTTTGCTGTTATTCAGGGAACTTCTTACATGTATATTGGGGATGACTTGGGCAATGTAGCTGTTGTCAAATATGATCACGAGAACGCAGAGCTCTCTGAGATGCCCTACAATATTCCCATGCACATTATACAAGAAGCATCAAACCATTTGGATTCTTTTCCCTCTTCTGTTGTTGAAGTTCTCCCACAACCCTCTGCTTCTGACAGCAGGGTTCTTATTGCATATGCAAATGGGTTGATTATTCTATGGGACATTTATGAAGCTCATGTGGTTGCAGTCAGAGGTTGTTCAAATCTTCAACCCAAGAATAGTAATGCAGCCAGTTCTCCAAATGGCACAGGAGATGAAACATCTAGGCTAGATACAAATGACGATAACGAAGAGAAAGAAATTTGCTGTGCATGCTGGGCATCTGCAGATG

Fln Alignment:

sp_v1.1_unigene29876___QGHLVSITNQNDIQIWDLDGRALACYIQWETNITAFAVIQGTSYMYIGDDLGNVAVVKYDHENAELSEMPYNIPMHIIQEASNHLDSFPSSVVEVLPQPSASDSRVLIAYANGLIILWDIYEAHVVAVRGCSNLQPKNSNAASSPNGTGDETSRLDTNDDNEEKEICCACWASAD
F6HCC0_______________QGFLVSVSNENEVQVWDLECRHLASNLQWESNITAFSVIYGTQYMYVGDEHGSLFVLKYDHQEGKLLHQPYHIPANAVAEVAGISVPIHHSIVGVLPQPCSHGNRMLIAYENGLLIVWDAFQDSVVCVRGYKDLQVKNKTVVNSPNDMRHELSNDTSENIPMEKDISSLCWASAN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
191		80	20		0.995493
200		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain