SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29826

Length: 641 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene29826 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HEN1; HEN1 (HUA ENHANCER 1); RNA methyltransferase	-	-	5.04467e-44	48%
FL-Next	sp=Small RNA 2'-O-methyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Blast2go	hen1 protein	-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	66%
Blast2go	mRNA cleavage involved in gene silencing by miRNA	GO:0035279	Biological Process	66%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	66%
Blast2go	regulation of flower development	GO:0009909	Biological Process	66%
Blast2go	specification of floral organ identity	GO:0010093	Biological Process	66%
Blast2go	production of siRNA involved in RNA interference	GO:0030422	Biological Process	66%
Blast2go	RNA methyltransferase activity	GO:0008173	Molecular Function	66%
Blast2go	cytoplasm	GO:0005737	Cellular Component	66%
Blast2go	nucleus	GO:0005634	Cellular Component	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Methyltransferase type 12	IPR013217	-	0.0	66%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
258	85		14		0.993533
259	85	14			0.993533
260		14		85	0.993533
263	85		14		0.993533
264		85	14		0.993533
266		14	85		0.993533
267	14	14			0.984337
269		85	14		0.993533
323		83		16	0.994512
375	25	50	25		0.995533
376	25	25			0.995533
377		75	25		0.996473
383			25	75	0.996473
387	25			75	0.996473
388		80	20		0.995498
389		80	20		0.995498
392	20			80	0.995498
394			20	80	0.995498
395	20			80	0.995498
402		25	75		0.99649
403		75	25		0.99649
420	66			33	0.997452
421	25			75	0.996473
462		50		50	1.0
477		75		25	0.996483

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain