SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29793

Length: 2285 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene29793
AGGCAGAGGCGGAGGAGCAGAAGGAGGAGGATACAAGTTAGGGCTTTCATTGCAGGGTCTTCAACTCAACTGTTAGTTATTAATGGGTGATTCGGCGCCTTTTTTCTCGGCTAGCTTGCTGTCGGATGCCTGGAAGTTATCCGGCAGCATTTACAGAACTGGCCACGAGCGTCGTGACCTTGGCTGTCACTCAATAGGGGATAAAGTTGTTTATGCTTTCCGTGGCTCTTTTGATCCTAATTTATTCACATCCACAGCAACCAAATATGGAGAATATCAAATTCAGCCGCAGGATCATATTGGTTTTCTTGACGGCTTGAAAGATGGGAATGACCAGAGAGCCTCCGTTCACCGGGGCGCTCTCAACCAGTTTCTGGACATTTGGAACAAATCCGGCGTCCAAACACAGGTCGGAGAAGATTGTAAGAGGGGGGCTACCATTGTGTTTACCGGCCACTCCACCGGGGGGGCTATTGCTGCGTTGGCCACTTTATGGGTGTTGGAGAAGCAAGGGCAGCCTGGTCCGTCCAAAGCGGTATTCTGCATCACGTTTGGGTTCCCTTTGATTGGTGATGAAATTCTGGCACGAGCAGTTCGTCGCAAAAAGTGGGCAGATCGGTTCTGCCATGTTGTTTCCAGGCGTGATATCTTCTCTAGAATATTACTGGCTCCGTCCATATCTGTTTCTAGGCATTTAGAAACACAGTTTCCCTATTGGAAGAGATCTATGCAGAATTCGGCCAATTCCCTGGGATCCACTGACACACCAATGGCAGAAGCTCCCCCAGGGGGAACTGCTGAGTTTGTTGGCACTGTAGTTCAGCATTGTTCTGCTGTAGCCAATTACACCAGTGCAGCCAAAATGAGTCCCAACAACCCCTTGATAGCTGCTGTGAAGCCTCTTGTAAAGCTAAGTCCTTATAGGCCATTTGGGCATTTTCTGTTCTGCTCAAGCAGTGGGGGAGTCTGGATAGAAAATCATTATGCTGTGTTGCCCGTCCTCTATTACGCCGCTCAAACCTTAGGTGCTAATTTAGAGGACTTCATCTTGGAACACTCTGGTTATGGCCACATCTTACCCAAAGCTCTGTTAAACATAGTGAAGTTGGGGGAAGAAAAGCTTTCAAATCTTCCTTTGACAGATGCTGCTTATCAAGATAGGGAGTTAGCAACACAACTAGATGCTCTTGGCCTTGGAATTCAGAATTGCCAAGCAAGACTTTCCCTGAGAGCAGCAGGACAAGTTCTGAAGCAGCAGATCGAGAACGTGTCCAATTTGAATATGGAATCCCCCAAAAAGATGGAAACCCCCATGGCAAATCTAGAAGAATATCGCCTGCAATGTCGGGGAAATGAGACTGGATACTATGATGCTTTCAAAAAGAAGCAACGGGGTAATGTGGACTTCCAGGCGAATCTGAAGAGGCTGGAGCTTGCAGGCTGGTGGGACGAGATCATACAGAACAAGTTCGATAAGGACGAATTACCCGATGATTTCCAGTGCAGGAAAGAGTGGATAATATGGGGCACTCACTACAGGCTACTTGTGGAGCCCCTGGACATCGCTAATTATTACAGATTGGGCAAGAATGAGGACTCAGGACCGTACCTCACTCATGGAAGGCCTCGTCGTTACAAAACCCTTGAAAAGTGGTTGGAAGGCAATGAAGAGATTCATCGGGAACTACCCACGAGGCTCACTCAGGACTCCTGCATCTGGGCTTTTGTTGAAGAAATTGCATCCTTGAAGAGTAAAAACAGTTATAATGATGAAAAAAGGATAGAATTGGAGAATCGAGTGGGGCGTTTGATTCAATCCAATGGTTTGTGCAGAGAAGATCTTTTGATGGGTGAATCCACCTTCAAAGCAGTTGTCGAATGGTTGTGGACGAATATGGCTCCAGCGCAGCAAGCATCATCTCCCTTCCGCTTTATTCTGCAAAACACCCAGAATTGATTAAAGAAGGTTGCCTAGTTAGGTAGGTTTCAATTATATATGTGGCACTCTGGGCTTTTGTTCCATTTTCATCTAGTTTTTCCCTCATATTTATGCATTGTAGCACCTGCGCTTCTGTTTCATTTTCATTAATTTTTCCCTCGTATTGCATAGCGGGCCTCCTTGGGTCTTCTCATTTTAAAACTACGGATTTGATTTCAGTGGTTTCATTTCCGTGAAAGTATGTATTATTAGCTTAGCTAGTTATATAAACATCTGTATTTCCTTGTGTCTATCTGTAAATTTTTCTATGATTATATAACAATATTTCTTTCGGTGGTTTGCTGGC

Ace file of the UniGene sp_v1.1_unigene29793 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Disease resistance protein n=1 Tax=Populus trichocarpa RepID=B9IEK5_POPTR	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	disease resistance protein	-	-	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, class 3	IPR002921	-	0.0	55%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9S3

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MGDSAPFFSASLLSDAWKLSGSIYRTGHERRDLGCHSIGDKVVYAFRGSFDPNLFTSTATKYGEYQIQPQDHIGFLDGLKDGNDQRASVHRGALNQFLDIWNKSGVQTQVGEDCKRGATIVFTGHSTGGAIAALATLWVLEKQGQPGPSKAVFCITFGFPLIGDEILARAVRRKKWADRFCHVVSRRDIFSRILLAPSISVSRHLETQFPYWKRSMQNSANSLGSTDTPMAEAPPGGTAEFVGTVVQHCSAVANYTSAAKMSPNNPLIAAVKPLVKLSPYRPFGHFLFCSSSGGVWIENHYAVLPVLYYAAQTLGANLEDFILEHSGYGHILPKALLNIVKLGEEKLSNLPLTDAAYQDRELATQLDALGLGIQNCQARLSLRAAGQVLKQQIENVSNLNMESPKKMETPMANLEEYRLQCRGNETGYYDAFKKKQRGNVDFQANLKRLELAGWWDEIIQNKFDKDELPDDFQCRKEWIIWGTHYRLLVEPLDIANYYRLGKNEDSGPYLTHGRPRRYKTLEKWLEGNEEIHRELPTRLTQDSCIWAFVEEIASLKSKNSYNDEKRIELENRVGRLIQSNGLCREDLLMGESTFKAVVEWLWTNMAPAQQASSPFRFILQNTQN*

Protein Length: 626

Fln nts: AGGCAGAGGCGGAGGAGCAGAAGGAGGAGGATACAAGTTAGGGCTTTCATTGCAGGGTCTTCAACTCAACTGTTAGTTATTA_-_ATGGGTGATTCGGCGCCTTTTTTCTCGGCTAGCTTGCTGTCGGATGCCTGGAAGTTATCCGGCAGCATTTACAGAACTGGCCACGAGCGTCGTGACCTTGGCTGTCACTCAATAGGGGATAAAGTTGTTTATGCTTTCCGTGGCTCTTTTGATCCTAATTTATTCACATCCACAGCAACCAAATATGGAGAATATCAAATTCAGCCGCAGGATCATATTGGTTTTCTTGACGGCTTGAAAGATGGGAATGACCAGAGAGCCTCCGTTCACCGGGGCGCTCTCAACCAGTTTCTGGACATTTGGAACAAATCCGGCGTCCAAACACAGGTCGGAGAAGATTGTAAGAGGGGGGCTACCATTGTGTTTACCGGCCACTCCACCGGGGGGGCTATTGCTGCGTTGGCCACTTTATGGGTGTTGGAGAAGCAAGGGCAGCCTGGTCCGTCCAAAGCGGTATTCTGCATCACGTTTGGGTTCCCTTTGATTGGTGATGAAATTCTGGCACGAGCAGTTCGTCGCAAAAAGTGGGCAGATCGGTTCTGCCATGTTGTTTCCAGGCGTGATATCTTCTCTAGAATATTACTGGCTCCGTCCATATCTGTTTCTAGGCATTTAGAAACACAGTTTCCCTATTGGAAGAGATCTATGCAGAATTCGGCCAATTCCCTGGGATCCACTGACACACCAATGGCAGAAGCTCCCCCAGGGGGAACTGCTGAGTTTGTTGGCACTGTAGTTCAGCATTGTTCTGCTGTAGCCAATTACACCAGTGCAGCCAAAATGAGTCCCAACAACCCCTTGATAGCTGCTGTGAAGCCTCTTGTAAAGCTAAGTCCTTATAGGCCATTTGGGCATTTTCTGTTCTGCTCAAGCAGTGGGGGAGTCTGGATAGAAAATCATTATGCTGTGTTGCCCGTCCTCTATTACGCCGCTCAAACCTTAGGTGCTAATTTAGAGGACTTCATCTTGGAACACTCTGGTTATGGCCACATCTTACCCAAAGCTCTGTTAAACATAGTGAAGTTGGGGGAAGAAAAGCTTTCAAATCTTCCTTTGACAGATGCTGCTTATCAAGATAGGGAGTTAGCAACACAACTAGATGCTCTTGGCCTTGGAATTCAGAATTGCCAAGCAAGACTTTCCCTGAGAGCAGCAGGACAAGTTCTGAAGCAGCAGATCGAGAACGTGTCCAATTTGAATATGGAATCCCCCAAAAAGATGGAAACCCCCATGGCAAATCTAGAAGAATATCGCCTGCAATGTCGGGGAAATGAGACTGGATACTATGATGCTTTCAAAAAGAAGCAACGGGGTAATGTGGACTTCCAGGCGAATCTGAAGAGGCTGGAGCTTGCAGGCTGGTGGGACGAGATCATACAGAACAAGTTCGATAAGGACGAATTACCCGATGATTTCCAGTGCAGGAAAGAGTGGATAATATGGGGCACTCACTACAGGCTACTTGTGGAGCCCCTGGACATCGCTAATTATTACAGATTGGGCAAGAATGAGGACTCAGGACCGTACCTCACTCATGGAAGGCCTCGTCGTTACAAAACCCTTGAAAAGTGGTTGGAAGGCAATGAAGAGATTCATCGGGAACTACCCACGAGGCTCACTCAGGACTCCTGCATCTGGGCTTTTGTTGAAGAAATTGCATCCTTGAAGAGTAAAAACAGTTATAATGATGAAAAAAGGATAGAATTGGAGAATCGAGTGGGGCGTTTGATTCAATCCAATGGTTTGTGCAGAGAAGATCTTTTGATGGGTGAATCCACCTTCAAAGCAGTTGTCGAATGGTTGTGGACGAATATGGCTCCAGCGCAGCAAGCATCATCTCCCTTCCGCTTTATTCTGCAAAACACCCAGAATTGATTAAAGAAGGTTGCCTAGTTAGGTAGGTTTCAATTATATATGTGGCACTCTGGGCTTTTGTTCCATTTTCATCTAGTTTTTCCCTCATATTTATGCATTGTAGCACCTGCGCTTCTGTTTCATTTTCATTAATTTTTCCCTCGTATTGCATAGCGGGCCTCCTTGGGTCTTCTCATTTTAAAACTACGGATTTGATTTCAGTGGTTTCATTTCCGTGAAAGTATGTATTATTAGCTTAGCTAGTTATATAAACATCTGTATTTCCTTGTGTCTATCTGTAAATTTTTCTATGATTATATAACAATATTTCTTTCGGTGGTTTGCTGGC

Fln Alignment:

sp_v1.1_unigene29793___LMGDSAPFFSASLLSDAWKLSGSIYRTGHERRDLGCHSIGDKVVYAFRGSFDPNLFTSTATKYGEYQIQPQDHIGFLDGLKDGNDQRASVHRGALNQFLDIWNKSGVQTQVGEDCKRGATIVFTGHSTGGAIAALATLWVLEKQGQPGPSKAVFCITFGFPLIGDEILARAVRRKKWADRFCHVVSRRDIFSRILLAPSISVSRHLETQFPYWKRSMQNSANSLGSTDTPMAEAPPGGTAEFVGTVVQHCSAVANYTSAAKMSPNNPLIAAVKPLVKLSPYRPFGHFLFCSSSGGVWIENHYAVLPVLYYAAQTLGANLEDFILEHSGYGHILPKALLNIVKLGEEKLSNLPLTDAAYQDRELATQLDALGLGIQNCQARLSLRAAGQVLKQQIENVSNLNMESPKKMETPMANLEEYRLQCRGNETGYYDAFKKKQRGNVDFQANLKRLELAGWWDEIIQNKFDKDELPDDFQCRKEWIIWGTHYRLLVEPLDIANYYRLGKNEDSGPYLTHGRPRRYKTLEKWLEGNEEIHREL---PTRLTQDSCIWAFVEEIASLKSKNSYNDEKRIELENRVGRLIQSNGLCREDLLMGESTFKAVVEWLWTNMAPAQQASSPFRFIL
D5A9S3_______________LMGGSETFYSASLLSAACNLSCSVYIGERDDPSYVRTDIGNTVVFAFRGSLDPQVVTSATTKYGECHIHDID---CLEWMKDGNNQPASVHKGAFSQFLDIWNNSPLQEEAGLDCERGKTVVFTGHSMGGAIASLATLCMLDKQLQPGKPKSIFCITFGFPLIGDEVVARAVRRKRWADQFCHVVLGRDAFSRILLAPCISVRKPLEALLPYLKRSMQSAGDSMGSTDTPMEEALPEGIAEFVGTVIQHCSAVVNYSSAAKMSPNNPSIAVVKSLVKLSPYRPFGHYVFCSRTGGISIENHFAVLPILYYALQTSDVNSEQFILEHVGYNHILPNALQNIVKL--QELSDLPLSDA---DSRIATQMDPLGLGIQNCQARLSLSAAGQLQKQQRENVSKLEDEYQAKMEIPMNILEDYRSLCIRDGSGYVDAFKKKERRDRDFQANLKRLELAGWWDEIILNKFDKDELPDDFQCSEEWIRRGTQYRLLVEPLDIANYYRLGKNEDSGIY---GRPSRYKTLQKWLEDNEE-NKQLQPPPAMLTQDSCLWAYVEENACLMDKNNYSDEKRIELENRVRPLIDSHGLCMEDFMTGESTFKMVVNWLWTHMSPAQQATSPFRSII

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
61		60		40	1.0
65	60			40	1.0
249	33		66		0.997452
474		12		87	0.992554
475		12	87		0.992554
476	87	12			0.992554
567	14		85		0.993533
584		87		12	0.992554
589		12		87	0.992554
624		12		87	0.992554
1164		50		50	1.0
1237		33		66	1.0
1359		80		20	0.995493
1361	80			20	0.995493
1363	20			80	0.995493
1366	16	83			0.994512
1553	25	75			0.996473
1623	28		71		1.0
1887		16		83	0.994512
2117		33	66		0.997471
2120	66		33		0.997471
2125			66	33	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain