SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29783

Length: 1454 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29783

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[E] COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase	-	-	1.0e-37	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 309 aas, putative chimeric sequence, your sequence is shorter than subject: 126 - 535

Fln protein: RRDLGCHSPLVFAGEARHCEDRLAEAALGKAFLLQEEDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQFAKPRSESFEEVNGVKLPSYRGDNINGDTFDEKSRVPDPVRKP*

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCACTTGTGTTTGCCGGAGAGGCAAGGCACTGCGAAGACAGGCTTGCAGAAGCAGCCCTTGGCAAGGCCTTCCTTCTTCAGGAGGAGGACTGTGCAGAGAGCTTCAAGGAATTCAATGCCAACAACATCAGGGACACTTTCAGGATCCTCCTGCAGATGGGTGCTGTCCTCATGTTTGGTGGTCAAATGCCGGTTGTCAAGGTAGGCAGAATGGCTGGACAGTTTGCAAAGCCCCGATCTGAGTCATTTGAGGAGGTTAATGGAGTAAAGCTTCCTAGTTACAGGGGAGATAACATTAATGGGGACACCTTTGATGAGAAATCCCGTGTTCCTGATCCAGTTAGAAAGCCATGA___ATTTGCCAGTCAGCGGTCACCAATTTGGAGTTGAACGACAATGTAAGAGGCATATTCCCACGCCATGGTTGAGATATGCAAGTCTCAACCAAAACTCTCTGTTTCTATCAACAATGAGTACAATAAAAATTCCCCAGAGGAAAGGTAATAATTGGACCTTGAATATTCATGTTTCCGTGGATACCAGACACCAGCGTGGTATAGCAATCAAATCTGCCCTTCTAGGCATTTCTATCACACATCAACTCTTCCTCCAAACTAAGAATCATGCAAAAACACTTCAAATTCCGTGCCTTTCAATCGATTATTAACTTCTTGCCAGTTATGGACATGCTCAGAAAGAGGTTTGGTGTGGATTTTCACATGCCTGCTTGTAAGTTCCCTTGGCTTCAGACCAAGAAATTTTAGGATCTCCATAATTTTCTTTGGCTTGCTTATTTCTTCATAATAAATTACAGTGTGCCGAGTGCTTTTGAAGAAGGAAAATGCATCATCAATTGTCTTTTGTATTTTGTGCAAGTATGCAGGCAGAAAGGTCACGTTCACAACTGGCTTATATCTTGCTAAAATTTCTGCCTCAAATTTGGAATGCACATGTGCTCGGTGTGTGCCATTTATAAGCTTTGCTTCCTTGTCAAACACATTGGCTAGGATGGATACATATCTCCTCAAAATGTTACGCCTGAAAAGAAAGATTACTGAGACCCCCCTTTCTTTAAAGTATGCCAATGTTTCCCTATTATATTCCATGGCACCCTGATTAAGCATCCACTTGAATCCAACGGCTGTAGTGCAGTCTTTCTTAGAAGCACTACTATTCCAGTCAAGATTATATACTTTATCAAGAATCTGTCTGATGGAAGCAAAGTTTTCCCTCCTGGTCTCATTTGCAAATAGCTCTCCATGTGAACTGACGTTTGGATGGTTGTTAAGGAGGGTTTCAAACCATCCACTTCCCGATCTTTGCATAGACAATATTAGAAAATTGTGTACAGGAGTGCAAGAACATTCTTCTCTATTGTCAGGACGTGGTTGAGGGTAATGAACAGGAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene29783___PLVFAGEARHCEDRLAEAALGKAFLLQEEDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQFAKPRSESFEEVNGVKLPSYRGDNINGDTFDEKSRVPDPVRK-P*ICQSAVT
A9NUF5_______________PLVFAGEARHLQERLAEAALGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQFAKPRSESFEEVNGVKLPSYRGDNINGDTFDEKSRIPDPERMIRAYCQSAAT

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
1037		11		88	0.991528
1040		11	88		0.991528
1041		88	11		0.991528
1042	11			88	0.991528
1043	88			11	0.991528
1045	11		88		0.991528
1046	88		11		0.991528
1049		11	88		0.991528
1051			11	88	0.991528
1052	88	11			0.991528
1055			11	88	0.991528
1056	88		11		0.991528
1059	11			88	0.991528
1061		88	11		0.991528
1062	11			88	0.991528
1065	88		11		0.991528
1142	11	88			0.991528
1280	11	88			0.991528
1295		77	22		0.999999
1301			22	77	0.999999
1305	22			77	0.999999
1307			22	77	0.999999
1308			77	22	0.999999
1309	75	25			1.0
1395			66	33	0.997452
1406	66			33	0.997452
1407		66	33		0.997452
1409			33	66	0.997476
1412	33			66	0.997464
1413		33		66	0.997457
1414	33	66			0.997457
1415			33	66	0.997464
1417		33		66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain