SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29769

Length: 771 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29769

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EXECUTER1 protein, chloroplast precursor, putative	-	-	9.99995e-41	53%
FL-Next	sp=Protein EXECUTER 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	25%
Blast2go	protein	-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to singlet oxygen	GO:0000304	Biological Process	0.0	64%
Blast2go	thylakoid membrane	GO:0042651	Cellular Component	0.0	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93YW0

Fln msg: Separated hits, possible frame ERROR between 421 and 556, Distance to subject end: 128 aas, your sequence is shorter than subject: 257 - 684

Fln protein: DNTENPGDVENGGDKVDGMDLRDDGLNRILNFLRERIPGIKFKILKVIAPEGADMDARIFDELLQDSDEEKNEEIDSGERSEDEIKIGELQDDKVTTGGDSDFSEKHKEIPIKLVIGGVLQSSSEDKTPPITIRVPARIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDVAKVFWNVEKGPIKVPRDIKEIIKLAVSQAQKRNGLVGSTTFHRINVAEASADPLSGLYIGAFGPYTSEVV

Protein Length: 258

Fln nts: TGATAACACAGAAAATCCCGGGGATGTGGAAAATGGGGGAGACAAGGTGGATGGCATGGATCTTAGGGATGATGGACTGAATCGAATTCTAAATTTTCTGAGAGAGAGGATACCAGGAATAAAGTTCAAGATTTTGAAAGTCATTGCACCTGAGGGGGCAGATATGGATGCAAGGATATTTGATGAGTTGTTGCAAGACAGTGATGAAGAGAAAAATGAGGAGATCGATTCTGGCGAAAGATCTGAAGATGAGATTAAAATTGGAGAATTACAAGATGATAAAGTAACTACTGGAGGAGATAGTGACTTTTCAGAGAAACACAAGGAAATTCCCATCAAACTTGTGATTGGTGGGGTTTTACAGAGTAGTTCAGAAGATAAGACCCCACCTATCACCATACGTGTGCCAGCTAGAATAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGATGTTGCAAAGGTCTTTTGGAATGTGGAAAAAGGTCCTATCAAGGTACCCAGGGATATCAAAGAAATAATTAAGCTTGCAGTTAGCCAAGCTCAGAAGAGGAATGGTTTAGTTGGGAGCACAACGTTTCACCGCATCAATGTTGCAGAGGCTAGTGCTGATCCATTATCTGGACTATATATTGGGGCCTTTGGTCCTTATACCTCTGAAGTGGTT

Fln Alignment:

sp_v1.1_unigene29769___ENGGDKVDGMDLRDDGLNRILNFLRERIPGIKFKILKVIAPEGADMD--ARIFDELLQDSDEEKNEEIDSGERSED----------EIKIGELQDDKVTTGGDSDFSEKHKEIPIKLVIGGVLQSSSEDKTPPITIRVPARIExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDVAKVFWNVEKGPIKVPRDIKEIIKLAVSQAQKRNGLVGSTTFHRINVAEASADPLSGLYIGAFGPYTSEVV
Q93YW0_______________EESDNSDDDSDLLEES-SGFQSFLRDMIPGVKVKVMKVTAPGRVDKDFISKVIEQIADEEDEENDLDIEDIDVEDDTKAEIDEKNADIELESVTDEIIDNNGG-------REIAVKFVIGDIVDRLSGNQPLKESLRSPANLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQLSGLTKFRRIDVTP-SLDPLDGLYIGAHGLYTSEVI

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
199			66	33	0.997452
200	66		33		0.997452
201		66	33		0.997452
202	66		33		0.997452
605		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain