SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29757

Length: 1438 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene29757 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cf-2.1 n=3 Tax=Solanum pimpinellifolium RepID=Q41397_SOLPI	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	disease resistance protein cf-	-	-	57%

Source	GOs	Term	Type	Identity
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	57%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	57%
Blast2go	detection of bacterium	GO:0016045	Biological Process	57%
Blast2go	protein binding	GO:0005515	Molecular Function	57%
Blast2go	transmembrane receptor protein serine/threonine kinase activity	GO:0004675	Molecular Function	57%
Blast2go	membrane	GO:0016020	Cellular Component	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	57%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	0.0	57%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 479 - 551

Fln protein: LYLTTNLLSGNIPISFSNISTLTELEIDTNKLTGSIPRELGMLTRLQILYLFENKLSGTIPTSLSNISTLTDVEIDNNNLTGSIPVDLGLLHNLQTLKLSHNELSGTIPASLSNISTLSHLEIPMNKLTGCIPQKLGQLTSLQLLYLFENELSGTIPVSLSNISTLTYLAISSNKLTGSIPQELGLLTSLQMLYIFENELSGTIPASFSNISTLTLLDINRNKLRGHIPSEFGAMLNSLSYLSLWGNQLSGKIPNSIGNCSNLRILLLDHNKLTQSVPVELSKLSLLEELSLHFNGLDSGGTTTMLFLLSLTNCSHLQELRLSNNILSGVLPPSIGKLSTNLTFLSLASNIIEGSIPPSINNLSSLTYLNLSGNFLNGSIPSLGNLKKLERLNLGNNRLEGNIPDDFEQLQHLGLLDISKNRLFGNISNSFAPLAPLEQLRRLSLHNNHLSGSIPASLGGCVNLELLDLSHNMLTGSIP

Protein Length: 480

Fln nts: GCTCTATCTTACCACAAATCTATTATCAGGCAACATACCTATTTCTTTTTCAAATATCTCCACTTTGACTGAACTAGAAATAGATACAAATAAACTCACTGGTAGCATTCCACGAGAGTTGGGCATGCTCACTCGTTTACAAATACTTTATTTATTTGAAAATAAATTATCAGGTACCATTCCTACTTCTTTGTCCAATATCTCCACTTTGACTGATGTGGAAATTGATAACAACAATCTTACTGGAAGCATTCCAGTAGATTTGGGTCTGCTCCACAATTTACAAACACTTAAGCTATCTCATAATGAATTGTCTGGCACCATTCCCGCTTCTCTTTCCAATATCTCCACTTTGAGTCACTTGGAAATTCCGATGAACAAGCTCACTGGCTGTATACCACAAAAATTGGGCCAGCTCACGAGTCTGCAATTGCTTTATCTGTTTGAAAATGAATTGTCAGGAACTATTCCCGTTTCTTTGTCTAATATTTCCACCTTGACTTATTTGGCAATTTCCTCAAACAAACTCACTGGCAGCATTCCACAAGAATTAGGTTTGCTCACTAGTTTGCAAATGCTTTACATATTTGAAAATGAATTGTCAGGGACCATTCCCGCTTCTTTTTCAAATATCTCCACACTCACACTCTTGGACATTAACAGAAACAAATTAAGAGGGCACATTCCATCAGAATTTGGTGCCATGCTCAATAGTTTGAGTTACCTTTCTTTATGGGGAAATCAACTTAGTGGAAAGATACCAAATTCCATTGGGAATTGCTCCAATCTAAGAATACTCCTCCTCGACCACAACAAGTTGACTCAGAGTGTGCCAGTAGAGTTGAGTAAGCTATCCCTCCTTGAAGAATTAAGCTTACATTTTAATGGGCTTGATAGTGGTGGCACTACAACCATGCTCTTTCTTCTATCTCTTACTAATTGTTCTCATCTACAAGAACTAAGGTTGAGCAATAATATATTAAGTGGTGTTTTGCCCCCTTCCATAGGAAAACTCTCTACCAATTTAACTTTCTTGTCATTAGCAAGCAACATAATAGAAGGAAGCATCCCTCCATCTATCAACAATCTTAGCAGCCTAACTTACCTAAATTTAAGTGGAAACTTTTTAAATGGCAGCATTCCATCATTAGGAAACCTTAAAAAATTAGAAAGATTGAATTTAGGAAACAATAGATTAGAAGGAAACATCCCTGATGACTTTGAACAATTACAACATCTTGGTCTTTTGGACATTAGCAAAAACAGACTTTTTGGAAATATTTCCAATTCCTTTGCACCCCTGGCACCCCTTGAACAACTAAGGAGACTCTCCCTTCATAACAACCACTTATCAGGAAGCATACCTGCTAGCTTGGGAGGCTGTGTAAATTTGGAATTGCTTGACTTGTCTCACAATATGCTCACTGGCAGCATACCA

Fln Alignment:

sp_v1.1_unigene29757___LYLTTNLLSGNIPISFSNISTLTELEIDTN-KLTGSIPRELGMLTRLQILYLFENKLSGTIPTSLSNISTLTDVEIDNNNLTGSIPVDLGLLHNLQTLKLSHNELSGTIPASLSNISTLSHLEIPMNKLTGCIP-XXXXXXXXXXXXXLFENELSGTIPVSLSNISTLTYLAISSNKLTGSIPQELGLLTSLQMLYIFENEL----SGTIP--ASFSNISTLTLLDINRNKLRGHIPSEFGAMLNSLSYLSLWGNQLSGKIPNSIGNCSNLRILLLDHNKLTQSVPVXXXXXXXXXXXXLHFNGLDSGGTTTMLFLLSLTNCSHLQELRLSNNILSGVLPPSIGKLSTNLTFLSLASNIIEGSIPPXXXXXXXXXXXXXXXNFLNGSI-PSXXXXXXXXXXXXXXXXXXXNIPDDFEQLQHLGL-LDISKNRLFGNISNSFAPLAPLEQLRRLSLHNNHLSGSIPASLGGCVNLELLDLSHN
B8LRW5_______________LRLSRNRLECPIPSTICGCRLLKIISLSNNFLLNGSIPSELGLLRNLKFLWLGINKLTGSIPASFGNMSSLKNFSLGYNQLHGSIPSELGRLSQLNALYLHHNYFSGQIPPSLSNCTLLLDLQLHANQLTGHIPWEFGGRLSQLENLFLWGNKLRGEIPKTLANCSHLRVLDLTDNQLTGTVPVELGRLFRLERLFLRRNQLVSGSTTTLPILTALSNCPFLEQIHLGANHLTGTLLSSIQQLSTQLSVFDLSHNEIGGKIPPEIGKLANLTYLNLEWNIFNGSIP------------------------------STLGRLQKLERLYLGRNKLQGSIPMEIGGLQT-LGLLSLSQNKLSGQIPHSFGQLQQLRDLYLDQNELSGNISPSIGDCLRLEVLDLSHNRFHGNIPRTVAGLRNLQFYFNLSSNLLEVSLP---LEISKMTMVQEINVAVNRLTGSIPSGLESCTEVQYLNLSWN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
644	25			75	0.996473
645	75		25		0.996473
647		25		75	0.996473
1037		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain