SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29721

Length: 1586 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29721

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger protein, putative	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	protein	-	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg:

Fln protein: MQNLMTSRWIAAQQKLPQSRASQSGNGEDTPGRCLSYRDSDQKIFGCEHYKRNCKLKAACCNQLFTCRFCHDKVSDHSMDRKATKEMMCMKCLQIQPVASNCVTPSCKGFSMAQYFCNICKFFDDEREVYHCPFCNLCRVGKGLGIDFFHCMTCNCCMSKTLAMHKCREKGLESNCPICSDFLFTSSAPVKSLPCGHFMHSACFQAYTCSNYTCPICSKSLGDMGVYFGMLDALLSAEELPEEYQGRIQDILCNDCQKKGTAPFHWLYHKCTTCGSYNTRVI*

Protein Length: 284

Fln nts: ATGGGATAGCTAGCTAGATAATTAGATAGATGAACTGATAGATGATGTTCATTTAATTTGTAAATGTTTGAATCAGTAAGCTTAATGGCATAATACTGTTACGTTGTTATATGGACATAGGGCAAACTATTCATGAAAGTATTGAGCAAGGCAATCAGAAATTCAAGCCTGGGTGGAAAGATATTTTCCGCATGAATCAAAAAAGAGCTTGAATCTGCAATACGCAAGGTGTCAAGTGATGCTTCACTTGATCCACGTCAAAAAGCATATCTT_-_ATGCAGAACCTTATGACCAGTCGGTGGATTGCTGCCCAGCAGAAGTTGCCACAGTCAAGAGCCAGTCAGTCTGGGAATGGTGAAGACACACCTGGGCGCTGTCTCTCATATCGAGATTCAGATCAGAAAATATTTGGATGTGAGCATTACAAGAGGAACTGCAAACTAAAAGCTGCTTGTTGTAACCAACTTTTCACCTGTAGATTTTGCCATGATAAAGTTAGTGACCACTCAATGGACAGGAAAGCAACAAAAGAGATGATGTGCATGAAATGCTTGCAGATTCAGCCTGTTGCTTCAAACTGTGTTACTCCTTCCTGCAAAGGATTTTCTATGGCACAGTATTTCTGCAATATTTGCAAGTTTTTTGATGATGAAAGAGAAGTATACCATTGCCCATTCTGCAATTTATGTCGTGTTGGAAAAGGACTCGGTATTGATTTCTTCCATTGCATGACTTGCAATTGTTGTATGTCAAAGACACTGGCAATGCATAAATGTCGAGAAAAGGGGCTTGAGTCAAACTGCCCAATATGCAGTGACTTCCTCTTCACTTCTAGTGCCCCAGTGAAATCTCTTCCTTGTGGCCACTTTATGCATTCAGCTTGTTTCCAGGCATACACCTGCAGTAATTATACATGCCCAATATGTAGCAAGTCGTTGGGAGACATGGGTGTATATTTTGGCATGCTTGATGCTTTGTTGTCGGCAGAAGAGCTCCCTGAGGAATATCAAGGGCGGATTCAGGATATTCTCTGTAATGATTGTCAAAAAAAAGGAACAGCTCCCTTTCATTGGTTATATCACAAGTGTACTACATGCGGGTCATACAACACAAGGGTGATTTAA___ATTTTGGTTATGTTTGACTAATATTTGCTGAAGCTTATAGCCAGATGCCTTACGTGACAGCTCCAAAAATTACGATGTATTTACAGAAAGAAAAAAGTAAGGGTTCACTTTGTTAACGACAAGTGCATCCACCATAAAATTGAAAAATAGAATCTGTAGAATGGGTTGGAAATGGAGCCAAGAATCCGATGTATATGACGTTCTCCATTCTGGAATTTAAGGTCTTGCAGGCCACTCGAGCACTAGAAATGGTTATACGGAATATGCAATTACAGTTGTACGAGTGTATATTGTGCAGAATGGTGTCATTGGCGAATCTGGATGCACGTGTGCAAGATTCTGTTTTTGCAGGCCTTCTATTGTTATTTTTTGGTAGTTAGTGATTCATTACGGAATCGCAAATTAACTGTAATATATGTAATCATTTACAATGGCATCATGAAATGTATATTTCGAAGTATTAT

Fln Alignment:

sp_v1.1_unigene29721___GCEHYKRNCKLKAACCNQLFTCRFCHDKVSDHSMDRKATKEM--------MCMKCLQIQPVASNCVTPSCKGFSMAQYFCNICKFFDDE--REVYHCPFCNLCRVGKGLGID-FFHCMTCNCCMSKTLAM-HKCREKGLESNCPICSDFLFTSSAPVKSLPCGHFMHSACFQAYTC-SNYTCPICSKSLGDMGVYFGMLDALLSAEELPEEYQGRIQDILCNDCQKKGTAPFHWLYHKCTTCGSYNTR
D5A9X0_______________GCDHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLKDPKQRHELPRYKVERVICSLCDTEQNV--NQVCENC-GVKMGEYFCSKCKFFDDDISKKQYHCDDCGICRVG---GRDNFFHCQKCGCCYTVGLQKAHSCVENSMRHNCPVCFEYLFDSLKPIAVLRCGHTMHGDCLSEMQMHSQYSCPMCSKSVCDMSLIWEQLDQEIAATPMPNDYQDKMVWILCNDCDTFSEVQFHIVAQKCLKCKSYNTR

SNPs (tot: 8)

Position	A %	C %	T %	Probability
570		16	83	0.994512
582		50	50	1.0
886	83		16	0.994512
968		11	88	0.991528
1171		83	16	0.994512
1196		66	33	1.0
1261		66	33	0.997457
1350		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain