SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29677

Length: 569 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene29677
ACTCCGTGGTGGCAATGTAACACATCATGAATACATCCAGGTTGGAGAAGGGCGTGATGTTGGCTTGAATCAGATTTCCATGTTTGAAGCCAAGGTTGCTAGTGGCAATGGTGAACAGGTGTTGAGCAGGGATGTATACAGGCTTGGTCACCGCCTGGATTTTTTCCGTATGCTGTCTTTTTATTACTCAACTGTTGGATTCTTTTTTAACGCCATGTTGGTGGTTCTAACTGTTTATGTATTCCTCTGGGGCCGGGTTTATATGGCTCTTAGTGGAGTGGAGGAAGCTTTTTTAAATGTAGCCGATGTCACAAACAATGTTGCACTTGGGGCAGTTCTCAACCAACAATTCATCATACAGCTTGGTATCTTCACAGCTCTTCCAATGGTCATAGAGAACTCTATAGAGCATGGATTCCTTTCAGCTATCTGGGATTCTTTTACCATGCAACTGCAGTTAGCATCTGTTTTTTATACATTTTCAATGGGTACTCGTACTCACTTCTTTGGCCGGACAATACTTCATGGTGGTGCAAAGTATCGGGCTACAGGGCGTGGCTTTGTTGTGC

Ace file of the UniGene sp_v1.1_unigene29677

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transferase, transferring glycosyl groups, putative (EC:2.4.1.34); K11000 callose synthase [EC:2.4.1.-]	-	-	82%
FL-Next	sp=Callose synthase 11; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	transferring glycosyl	-	-	90%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	82%

Source	KEGGs	Term	Identity
AutoFact	Fructose and mannose metabolism	00051	82%
AutoFact	N-Glycan biosynthesis	00510	82%
AutoFact	Mucin type O-Glycan biosynthesis	00512	82%
AutoFact	Various types of N-glycan biosynthesis	00513	82%
AutoFact	Other types of O-glycan biosynthesis	00514	82%
AutoFact	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	82%
AutoFact	Glycosaminoglycan biosynthesis - keratan sulfate	00533	82%
AutoFact	Lipopolysaccharide biosynthesis	00540	82%
AutoFact	Peptidoglycan biosynthesis	00550	82%
AutoFact	Glycerolipid metabolism	00561	82%
AutoFact	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	82%
AutoFact	Sphingolipid metabolism	00600	82%
AutoFact	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	82%
AutoFact	Glycosphingolipid biosynthesis - globo series	00603	82%
AutoFact	Glycosphingolipid biosynthesis - ganglio series	00604	82%
AutoFact	Carotenoid biosynthesis	00906	82%
AutoFact	Zeatin biosynthesis	00908	82%
AutoFact	Flavonoid biosynthesis	00941	82%
AutoFact	Anthocyanin biosynthesis	00942	82%
AutoFact	Flavone and flavonol biosynthesis	00944	82%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	82%
AutoFact	Betalain biosynthesis	00965	82%
AutoFact	Biosynthesis of type II polyketide products	01057	82%
AutoFact	Metabolic pathways	01100	82%
AutoFact	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	90%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	90%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	90%
Blast2go	reproduction	GO:0000003	Biological Process	90%
Blast2go	defense response signaling pathway, resistance gene-dependent	GO:0009870	Biological Process	90%
Blast2go	pollen development	GO:0009555	Biological Process	90%
Blast2go	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	90%
Blast2go	leaf senescence	GO:0010150	Biological Process	90%
Blast2go	defense response to fungus	GO:0050832	Biological Process	90%
Blast2go	transferase activity	GO:0016740	Molecular Function	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 48	IPR003440	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9S9U0

Fln msg: Distance to subject end: 303 aas, your sequence is shorter than subject: 189 - 1768

Fln protein: LRGGNVTHHEYIQVGEGRDVGLNQISMFEAKVASGNGEQVLSRDVYRLGHRLDFFRMLSFYYSTVGFFFNAMLVVLTVYVFLWGRVYMALSGVEEAFLNVADVTNNVALGAVLNQQFIIQLGIFTALPMVIENSIEHGFLSAIWDSFTMQLQLASVFYTFSMGTRTHFFGRTILHGGAKYRATGRGFVV

Protein Length: 190

Fln nts: ACTCCGTGGTGGCAATGTAACACATCATGAATACATCCAGGTTGGAGAAGGGCGTGATGTTGGCTTGAATCAGATTTCCATGTTTGAAGCCAAGGTTGCTAGTGGCAATGGTGAACAGGTGTTGAGCAGGGATGTATACAGGCTTGGTCACCGCCTGGATTTTTTCCGTATGCTGTCTTTTTATTACTCAACTGTTGGATTCTTTTTTAACGCCATGTTGGTGGTTCTAACTGTTTATGTATTCCTCTGGGGCCGGGTTTATATGGCTCTTAGTGGAGTGGAGGAAGCTTTTTTAAATGTAGCCGATGTCACAAACAATGTTGCACTTGGGGCAGTTCTCAACCAACAATTCATCATACAGCTTGGTATCTTCACAGCTCTTCCAATGGTCATAGAGAACTCTATAGAGCATGGATTCCTTTCAGCTATCTGGGATTCTTTTACCATGCAACTGCAGTTAGCATCTGTTTTTTATACATTTTCAATGGGTACTCGTACTCACTTCTTTGGCCGGACAATACTTCATGGTGGTGCAAAGTATCGGGCTACAGGGCGTGGCTTTGTTGTGC

Fln Alignment:

sp_v1.1_unigene29677___LRGGNVTHHEYIQVGEGRDVGLNQISMFEAKVASGNGEQVLSRDVYRLGHRLDFFRMLSFYYSTVGFFFNAMLVVLTVYVFLWGRVYMALSGVEEAFLNVADVTNNVALGAVLNQQFIIQLGIFTALPMVIENSIEHGFLSAIWDSFTMQLQLASVFYTFSMGTRTHFFGRTILHGGAKYRATGRGFVV
Q9S9U0_______________LRGGNVTHHEYIQVGKGRDVGLNQISMFEAKVASGNGEQALSRDVYRLGHRLDFFRMLSFFYTTVGYYFNTMLIVFTVYAFLWGRLYLALSGVEKIAKDRS--SSNEALGAILNQQFIIQLGLFTALPMILENSLERGFLPAVWDFITMQLQLASFFYTFSMGTRTHYFGRTILHGGAKYRATGRGFVV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
460	83		16		0.994512
473			40	60	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain