SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29665

Length: 1197 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29665

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-Myb5 transcription factor (Fragment) n=2 Tax=Pinus RepID=B1PPT8_PINPS	-	-	99%
FL-Next	tr=R2R3-MYB transcription factor MYB5; Picea glauca (White spruce) (Pinus glauca).	-	-	87%
Blast2go	myb-like protein	-	-	87%

Source	InterPros	Term	Type	Identity
Blast2go	SANT/Myb domain	IPR001005	-	87%
Blast2go	Homeodomain-like	IPR009057	-	87%
Blast2go	Homeodomain-related	IPR012287	-	87%
Blast2go	Myb, DNA-binding	IPR014778	-	87%
Blast2go	Myb transcription factor	IPR015495	-	87%
Blast2go	Myb domain, DNA-binding	IPR017930	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A5JYE9

Fln msg:

Fln protein: MGRSPCCEKVHTNKGAWTKEEDDRLIAHIRTHGEGGWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRPLGQPHNSNTICPSVPALEHEILAFQRPRTPEIADFFQYERSESSPMEPATSKDAEEHPDLNLDLCISLPVHSPPATSRASSVDGTVDSKPNSVSSHMGLQVNYGVQCENRYCEESASGVSSFYTLVL*

Protein Length: 257

Fln nts: AAATCTCGTGTCTGTCTGTCTGTCAAC_-_ATGGGGAGATCTCCCTGCTGTGAAAAAGtTcATACtAACAAAGGGGCGTGGACCAAAGAAGAgGACGAtCGCCTcATCGCTCACATTCGAaCtCACGGCGAAGGcgGCTGGCGtTCGCTTCCCAAGGCCGCAGGGCTGATGCGCTGCGGGAAGAGCTGCAGGCTCCGATGGATAAACTACCTGCGTCCTGATCTGAAGCGTGGAAACTTCTCAGAAGAAGAAGACGAACTCATCATCAAACTCCACTCCCTACTCGGCAACAAGTGGTCTCTTATTGCAGGCAGATTGCCCGGGCGGACGGACAACGAGATAAAGAACTACTGGAATACTCACATCAAGAGAAAATTGCTAAACAGGGGACTCGACCCCCAGTCTCATCGCCCCCTCGGCCAGCCGCACAACAGCAACACTATCTGCCCCTCTGTGCCCGCCCTCGAGCACGAAATTCTGGCGTTCCAGAGGCCAAGAACGCCGGAGATAGCAGATTTCTTTCAATACGAACGCTCTGAAAGCTCGCCGATGGAACCGGCCACTTCTAAAGACGCGGAAGAGCATCCCGACCTCAATCTTGATTTGTGCATCAGCTTGCCAGTTCATTCGCCCCCCGCCACAAGCAGGGCTTCGAGCGTCGATGGAACCGTGGATTCAAAACCTAATTCGGTTTCTTCTCACATGGGGTTGCAAGTAAATTATGGTGTGCAATGCGAGAACAGATATTGTGAAGAGAGTGCTTCCGGTGTCTCGAGTTTTTACACGCTCGTCTTATAG___AAGATTTGAGCTTTATGGTTTGCTTATTAACACCACTAAGCATTCATATGATGAATAGGCAGAGTGAAACTATATGTTTGCTCATTGTGGCAGCCCGGAGTTTGCAGTTAATAGACAGGGACGCAGCTGGACAGCAGTTACCCAAATTATTATTTAGAGAGTGTAGATAGCTCACCTCTGAACATAGGAATCGCGGTTTCACCATGGCGCTCTGTAATATTTAAAGCGATTCATATGGAAGCTTGAGCGCGAAGTCTCCAGTGCCCTATCATCAACTAATGTAATTGAAGTGCAAATGGTCACATGCCCGTGTAAATAATGATACTATGATTTTCATATTTCCAAGTTTTACTCGCTGTTCCGCACAGCTTTCTTTATATATATATTTGGCTTGTATGAATC

Fln Alignment:

sp_v1.1_unigene29665___MGRSPCCEKVHTNKGAWTKEEDDRLIAHIRTHGEGGWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRPLGQPHNSNTICPSVPALEHEILAFQRPRTPEIADFFQYERSESSPMEPATSKDAEEHPDLNLDLCISLPVHSPPATSRASSVDGTVDSKPNSVSS---HMGLQVNYGVQCENRYCEESASGVSSFYTLVL
A5JYE9_______________MGRSPCCEKAHTNKGAWTKEEDDRLIAHIRAHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNKGLDPQSHRPLGQVHSSNTTCSSLPAPEHEILAFQSPRTPEIADFFQYERSESSPIEPAASKD-EEYPDLNLELCISLPVHSAPAASRASSVDRTVDSKPNSGSELCCPMGLQVNYGAQCENRYSEENASGFSSHYRLVL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
605			10	90	0.90298
607			10	90	0.90298
611		10		90	0.90298
613	90		10		0.90298
656	14		85		0.993533
749	12		87		0.992554
752	87		12		0.992554
753	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain