SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29661

Length: 356 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene29661
CGTCGTGACCTTGGCTGTCACTCATGTTTATGACTCCGGACTTCAGATTACAGAAAGAGCACTCGAATTCAACTGCACTTCCTGCGCAACAGGCGATTGGAAAGATCAAAACTAAGGGGCCTTCCTTCTTTCCATCGGGTTATGGTTACCTTTCGGATTTCTATTTCTATGTTTACCTATAAAATAAATAAAATAAAAAATAATGTCTTGTAATTAGAAATACGGGCAATGGTAAATGTTGACATGATCCAAGGAAATAATGTTGTTATTGCGGAATGGTTAATGTTTATATAATCCATTTAAATAATGCTCTTTCAACAATCAAGGTTTAAGTAAATAAGGTTTTTTCTTATTTG

Ace file of the UniGene sp_v1.1_unigene29661

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pollen allergen n=1 Tax=Pinus radiata RepID=O65013_PINRA	-	-	5.0e-10	93%
FL-Next	tr=Pollen allergen; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	93%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: O65013

Fln msg: your sequence is shorter than subject: 38 - 293

Fln protein: VVTLAVTHVYDSGLQITERALEFNCTSCATGDWKDQN*

Protein Length: 39

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTATGACTCCGGACTTCAGATTACAGAAAGAGCACTCGAATTCAACTGCACTTCCTGCGCAACAGGCGATTGGAAAGATCAAAACTAA___GGGGCCTTCCTTCTTTCCATCGGGTTATGGTTACCTTTCGGATTTCTATTTCTATGTTTACCTATAAAATAAATAAAATAAAAAATAATGTCTTGTAATTAGAAATACGGGCAATGGTAAATGTTGACATGATCCAAGGAAATAATGTTGTTATTGCGGAATGGTTAATGTTTATATAATCCATTTAAATAATGCTCTTTCAACAATCAAGGTTTAAGTAAATAAGGTTTTTTCTTATTTG

Fln Alignment:

sp_v1.1_unigene29661___VTHVYDSGLQITERALEFNCTSCATGDWKDQN
O65013_______________VGSVYDSGLQITERALEFNCTSCATGDWKDQN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain