SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29598

Length: 303 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene29598
CGTCGTGACCTTGGCTGTCACTCACTCCATGAACTAAATGACCTTACTCCAGGACCTAAGAATTCTTCAGATGAAGTAGCACAGTGGAGTGTGTTACAGTTTAACACCGGCTCAACCACACCTTTTGTTATTAAGTGTGGTGCAACGTTGAATTTAGAGCTTGTGGTGAAGGGACAGGCTAAACTGCAAGACAAGAGTGGTAATGAAATTGTTGCAGTTGTACCTAAGCCAGCAGTGTTAACAAATTTGAGCCTAGAAGAGATAAAACAAATTCTTTCACAACTTCCAGAGGCTTTATGTCAG

Ace file of the UniGene sp_v1.1_unigene29598

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SXG7_RICCO	-	-	5.0e-25	60%
FL-Next	sp=Geminivirus Rep-interacting motor protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%
Blast2go	kinesin motor	-	-	9.71351e-25	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	microtubule binding	GO:0008017	Molecular Function	9.71351e-25	75%
Blast2go	cell plate	GO:0009504	Cellular Component	9.71351e-25	75%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	9.71351e-25	75%
Blast2go	phragmoplast	GO:0009524	Cellular Component	9.71351e-25	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.71351e-25	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LX99

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 101 - 1273

Fln protein: RRDLGCHSLHELNDLTPGPKNSSDEVAQWSVLQFNTGSTTPFVIKCGATLNLELVVKGQAKLQDKSGNEIVAVVPKPAVLTNLSLEEIKQILSQLPEALCQ

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCCATGAACTAAATGACCTTACTCCAGGACCTAAGAATTCTTCAGATGAAGTAGCACAGTGGAGTGTGTTACAGTTTAACACCGGCTCAACCACACCTTTTGTTATTAAGTGTGGTGCAACGTTGAATTTAGAGCTTGTGGTGAAGGGACAGGCTAAACTGCAAGACAAGAGTGGTAATGAAATTGTTGCAGTTGTACCTAAGCCAGCAGTGTTAACAAATTTGAGCCTAGAAGAGATAAAACAAATTCTTTCACAACTTCCAGAGGCTTTATGTCAG

Fln Alignment:

sp_v1.1_unigene29598___LHELNDLTPGPKNSSD---EVAQWSVLQFNTGSTTPFVIKCGATLNLELVVKGQAKLQDKSGNEIVAVVPKPAVLTNLSLEEIKQILSQLPEAL
Q9LX99_______________LEQSHDRRPSLESISSGETDVSQWNVLQFNTGSSAPFIIKCGGNNNSELVIKADARVQEPKGGEIVRVVPRPSVLVNMSLEEMKQMFVQLPEAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain