SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29559

Length: 1475 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29559

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding region, ATPase-like domain-containing protein-related	-	-	4.0e-35	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	atp-binding atpase-like domain-containing	-	-	1.1477e-38	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	1.1477e-38	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A973

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 243 - 290

Fln protein: *KRYRLQQQ*DLQRKLLSLMFTGSISIIKIGLLCHFGRFGKTIVVEEEV**VFLKQTS*NLHMINRILKKLQSSYGWSQDSSR*LLISGERIVIKLDIKERISQKEKIHRVIYLQFRILVHCQVLFQDCQALFQEYHLSKFRIVRAWPP*QILFVVTLAVTSGKELQSVPGTSNKLVNNICEENIQLFMRCEQYRHRQLELNQMITRMETELKEGKRKYAQLVSNVEGQKKQRLEMLRKVQG*

Protein Length: 244

Fln nts: ATGAAAGAGGTATCGGTTGCAACAACAATAGGATTTACAAAGGAAGCTCCTCTCATTAATGTTCACGGGTTCAATATCTATCATAAAAATCGGCTTATTATGCCATTTTGGAAGGTTTGGCAAGACAATAGTAGTAGAGGAAGAGGTGTAGTAGGTGTTCTTGAAGCAAACTTCATAGAACCTGCACATGATAAACAGGATTTTGAAAAAACTGCAGTCCTCATACGGTTGGAGTCAAGACTCAAGCAGATGACTCTTGATTTCTGGAGAGAGAATTGTGATAAAATTGGATATCAAGGAAAGAATAAGCCAAAAAGAGAAGATCCACAGAGTGATTTACCTTCAATTCAGAATCCTCGTCCATTGTCAAGTGTTGTTCCAGGATTGCCAAGCGTTGTTCCAGGAGTATCACCTCAGCAAATTTCGAATAGTCAGGGCATGGCCCCCTTGACAAATCCTGTTCGTCGTGACCTTGGCTGTCACTAGTGGGAAGGAACTACAATCAGTTCCGGGTACATCAAACAAATTAGTTAATAACATCTGTGAGGAGAATATACAACTATTCATGAGGTGTGAGCAATATCGTCACAGACAACTGGAGTTAAACCAGATGATTACAAGGATGGAGACTGAATTGAAGGAGGGGAAACGGAAATATGCACAACTTGTATCAAATGTGGAAGGCCAAAAGAAGCAAAGACTGGAGATGTTGAGAAAGGTACAAGGATGA___TAATAAGAGCCTTTGGAAAGCAATAGAAGCCAATTCAAAAGCGTATGGCTAAAATTTCCTCCGATTTTTTTTGGACTGCAATCCTTTCCTCGGTACCAGATATTGAACAAAGTTTATTTCTAAGGCAAGGAGGAAATCTTGGTCTGGTATATCATGCTGTCCATTTTTGTGCAATTAAATTGAAAGCCTCGGCAATTTTTGCCCACAAGATATTCTCAGGCTGTTAGTAACGATCTGTATAGGGTTATTGTTGCAAACCTAGTAGGGAGAACATTCAATGGCAATGAGGAGGTAGCAATCTGTGACTGTAAGATATCAACTTCACCGCCCAATATCCAATTTTTTGTAGTATCTATTACCCATGGGTAAAACCATGGATAGAAATACTCCATTTGTAAAGATGTACAGGAAATTTTTGATGAGCTGTGTTTTACACAGTAAGATATCGTTATATTTTCTTCTACCTCTTGATTATTTCTCAGGCCATCTTATTGATAGTGTTGATCTTACCATAGGGACAATTAAATGAAAACCAAAGCAATCATGGAGGAAAGGTATTCACTGAGCATCAAATATTTGCTGCAGATAGGGACTGAGATTAGACCTAATCAAGAAATGTTTTGGGTCTCTGGTTCCATATTCATATGTAAAACTGACCTGTTCCTTTGAGCATTTTTCCATGGTCACTATAGTGGGCACCGTTGGATGACAGGAAGCTCCCTTCTTTGGATCAGTTTAGATCATT

Fln Alignment:

sp_v1.1_unigene29559___TSGKELQSVPGTSNKLVNNICEENIQLFMRCEQYRHRQLELNQMITRMETELKEGKRKYAQLVSNVEGQKKQRLEMLR
D5A973_______________TGNKYSQATVFLPGKFVEKVTDYNIQLFMRCEQYRHSKTQLHQVITRLENELTMARKKFAQLRSSVELQNKKQAESLR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1058		66	33		0.997452
1120	62		37		1.0
1179	50	50			1.0
1223		50		50	1.0
1245		10		90	0.90298
1324		88		11	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain