SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29530

Length: 930 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene29530 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lysosomal pro-X carboxypeptidase, putative (EC:3.4.16.2); K01285 lysosomal Pro-X carboxypeptidase [EC:3.4.16.2]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	lysosomal pro-x	-	-	69%

Source	ECs	Term	Type	e value	Identity
AutoFact	Lysosomal Pro-Xaa carboxypeptidase.	EC:3.4.16.2	-	0.0	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S28	IPR008758	-	0.0	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPV2

Fln msg: your sequence is shorter than subject: 264 - 501

Fln protein: VIKDSWNVIDNMTSTAEGLKSLRKALRLCESNSDDDIAGNLGGWFYDAYYTAAMTDYPVAANFVQPLPAYPVKQMCKAIDNPSGSTDLLNRLYGAANVYYNYTGSSSCFDLQSSDPHGEAGWGFQACTEMVMPMADDPKTSMFPSSTYDYKGFADSCESAYGVQPRRHWITTLYGGHHIKRVLKNFASNIIFFNGLRDPWSGGGVLEDINESVVAIVAKEGAHHVDFRFATKEDPQWLKDIRTKEISIIKMWLQQYYMDLQNS*

Protein Length: 265

Fln nts: AGTGATCAAGGATTCCTGGAATGTGATAGATAACATGACATCAACTGCTGAAGGCTTGAAATCTCTAAGAAAAGCGCTCAGACTTTGCGAATCAAATAGCGATGACGATATTGCTGGGAATTTGGGGGGATGGTTCTATGATGCTTACTACACCGCTGCCATGACAGATTATCCAGTTGCGGCCAATTTTGTTCAGCCTCTGCCAGCATATCCTGTGAAGCAAATGTGCAAGGCAATAGATAATCCCTCTGGCAGTACAGACCTCCTCAATCGATTATACGGCGCAGCCAACGTTTATTATAACTACACAGGGAGCAGTTCTTGCTTTGATCTCCAATCAAGTGATCCTCATGGCGAGGCTGGCTGGGGATTTCAGGCTTGTACAGAAATGGTGATGCCTATGGCTGACGACCCAAAGACAAGTATGTTTCCTAGTTCGACTTACGACTACAAGGGGTTTGCAGATTCTTGTGAATCTGCCTATGGAGTTCAACCTAGGCGCCACTGGATCACTACTCTATACGGTGGACATCACATTAAAAGGGTTCTCAAGAATTTTGCGAGCAACATAATATTTTTCAATGGACTGCGAGATCCATGGAGTGGCGGAGGGGTATTAGAGGATATTAACGAAAGCGTAGTCGCTATTGTGGCAAAAGAAGGAGCGCATCATGTAGATTTCAGATTTGCAACGAAAGAAGATCCACAATGGCTTAAAGATATCCGAACAAAGGAAATTTCAATAATCAAAATGTGGCTACAACAATATTACATGGACCTTCAGAACTCTTGA___CTTCTATAATAATAATAATAATAATGGTCATTTGGGTCCCTCCGTGATGAGGGAGCATCAGAATTCTTGACTTCTATTATAATAATAATAATAAGGGTCATTCGGGTCCCTCCTCGATGAGGGAGCATCGACTCATT

Fln Alignment:

sp_v1.1_unigene29530___VIKDSWNVIDNMTSTAEGLKSLRKALRLCESNSDDDIAGNLGGWFXXXXXXXXXXXYPVAANFVQPLPAYPVKQMCKAIDNPSGSTDLLNRLYGAANVYYNYTGSSSCFDLQSSDPHGEAGWGFQACTEMVMPMADDPKTSMFPSSTYDYKGFADSCESAYGVQPRRHWITTLYGGHHIKRVLKNFASNIIFFNGLRDPWSGGGVLEDINESVVAIVAKEGAHHVDFRFATKEDPQWLKDIRTKEISIIKMWLQQYYMDLQNS*LL
B8LPV2_______________VIKGSWNVIDEMTSTPEGLKSLRKALRICKSNSDNYIAGNLAGWLYDAYYTAAMTDYPVAANFVQPLPAYPVKQMCKAIDNPSGSTDLLSQLYGVANVYYNYTGRSSCFDIRPSDPHGEDGWQFQACTEMVMPMADDPKKSMFPNSTFDYQERVDSCESAYGVQPRRHWITTQYGGHHIKRVLKNFASNIIFFNGLRDPWSGGGVLEDINESVVAIVAKEGAHHVDFRFATKDDPQWLKDARTKEISIIKSWLQQYYMELQNSSLI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
530	87	12			0.992554
531		12		87	0.992554
533			87	12	0.992554
557		20		80	0.995493
655		20		80	0.995493
684	80		20		0.995493
685	20	20			0.99255
804		33		66	0.997452
807		66	33		0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain