SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29513

Length: 1457 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29513

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	caspase, putative	-	-	41%
FL-Next	tr=Metacaspase type II; Picea abies (Norway spruce) (Picea excelsa).	-	-	42%
Blast2go	protein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	cysteine-type peptidase activity	GO:0008234	Molecular Function	0.0	60%
Blast2go	apoplast	GO:0048046	Cellular Component	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase C14, caspase catalytic	IPR011600	-	0.0	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q70VV0

Fln msg: your sequence is shorter than subject: 338 - 418

Fln protein: MAKRKYAVLVGCNYPNTENELQGCVNDVMRMQHALIHRFGFGKRNINLLIDTDEAYIKPTGENIRAALLAMVHRAKSGDVLFFHYSGHGTRVRLHESSGYDECIVPCDFNLLTDEDFRVIVNKVPLGTSFTMVSDSCHSGGLIDKEKEQIGPAHSRSLTDTEASAQHSSKSKFLPLGALLEVLREKTGEDEMEADKINIALFQTFGDKASSKVKWLVNMHGSVLETKKGENKGHRLDVQEELPQRQRIHEDMGILLSGCQANETSDDACPTGDPHKAYGAFSNAIQTILERHGNPISNRELVLGTRKLLVEQGYSQHPCLYCSDNNADAAFLCEKST*

Protein Length: 339

Fln nts: ATGGGGTGCATTACCGGCGCGCCAATAAACATTCCAACATAAGTTTTAAGTAGAAATGTGGAGACAAACGTGGTCCTCTCCAGTCTTGTTTTATTAGTTAAGGCTGGTTCCGGGAAGAAGTTTCTCCAGGAATCGTGAAAGTGAAGGATACTCTTTCAATATTAATTTACTCCCCATCTCAAACAATTCACTACAAATATACGCCCATCTCGCCCTCTTGGTTTCAAAATTATTCAGCTTCTTATCAAGCTTTCTTGCTGTCAAGAAGTTAGCTGTCAGGATTTTGACA_-_ATGGCCAAACGAAAATACGCTGTGCTAGTGGGATGCAATTATCCCAACACAGAAAATGAACTTCAAGGATGTGTAAACGACGTTATGAGGATGCAACACGCGCTCATTCATCGCTTCGGCTTTGGCAAACGGAACATCAATCTCCTTATCGACACCGATGAAGCGTATATAAAGCCCACAGGCGAAAACATTCGTGCGGCTTTGCTCGCCATGGTTCACCGTGCCAAATCCGGAGACGTCCTCTTCTTTCACTACAGCGGCCACGGCACTCGCGTTCGCCTGCATGAGTCCTCCGGCTATGATGAGTGTATCGTCCCATGCGATTTCAATCTTCTTACAGATGAGGACTTCAGGGTTATAGTGAATAAGGTGCCTCTGGGGACAAGTTTCACCATGGTGTCCGACTCCTGTCACAGCGGAGGTCTAATTGACAAAGAGAAGGAGCAAATCGGACCTGCTCATTCCAGATCATTAACAGATACAGAAGCATCAGCCCAACATTCTTCCAAGAGCAAGTTCTTGCCCTTGGGCGCGTTACTGGAAGTCTTAAGAGAAAAGACAGGCGAAGATGAAATGGAGGCAGATAAAATTAATATTGCCCTCTTTCAGACCTTCGGTGATAAGGCCAGCTCCAAAGTTAAGTGGCTTGTGAACATGCACGGCTCTGTCCTGGAGACCAAAAAGGGTGAAAATAAAGGCCACCGCCTAGATGTTCAGGAGGAGCTCCCGCAGCGGCAGCGTATACATGAAGACATGGGTATTCTATTGAGCGGATGCCAAGCTAATGAGACATCTGACGACGCCTGCCCTACCGGTGATCCGCACAAAGCATATGGAGCATTCAGTAACGCTATTCAGACAATTCTTGAACGACATGGAAATCCCATCAGCAACAGGGAATTGGTTTTGGGAACAAGAAAGCTGCTTGTGGAACAAGGGTACTCACAGCATCCTTGTCTCTACTGCAGTGACAATAACGCCGATGCCGCTTTCCTGTGCGAGAAATCCACCTGA___AAGAATTCTCCTGAAGCATCCATCGTAAGAGTGATGACAAGAACAATAAAAAGAAAATAAGGAATTAAGATTGTGGATTTTCTTAGTGGTTTCTATTGTAAAGTACTGTTATTTTGAATAACAAGTGGGCAGGCTACCTTCCACATAAAGTCTG

Fln Alignment:

sp_v1.1_unigene29513___KYAVLVGCNYPNTENELQGCVNDVMRMQHALIHRFGFGKRNINLLIDTDEAYIKPTGENIRAALLAMVHRAKSGDVLFFHYSGHGTRVRLH----ESSGYDECIVPCDFNLLTDEDFRVIVNKVPLGTSFTMVSDSCHSGGLIDKEKEQIG---------PAHSR----------------------------------------SLTDTEASAQHSSKSKFLPLGALLEVLREKTGEDEMEADKINIALFQTFGDKASSKVKWLVNMHGSVLETKKGEN-------------KGHRLD------------VQEELPQRQRIH--------EDMGILLSGCQANETSDDACPTGDPHKAYGAFSNAIQTILERHGNPISNRELVLGTRKLLVEQGYSQHPCLYCSDNNADAAFLCE
Q70VV0_______________KKAVLVGCNYPGTKAELKGCVNDVNRMYKCLVERYGFEEENIRVLIDTDDSYPQPTGANVRRALKTLVEGSRAGDIIFFHYSGHGVRLPAETGDKDDTGYDECIVPCDMNLITDDDFREFIDKVPRDCFCTIVSDSCHSGGLIERAKEQIGESTKDGDERPEHKKQGGFGFRDLLSESVHGAFESRGIHLPSRHEHKDRRESDEGETQEIEYHGKGRAKNRSLPLSTLIEILNEKTGRHDIDVGKIRPTLFDMFGDDASPKVKKFVKVLVTKLQSSGNEGGLLGAIGNLAQQFLKQKLDGSDGGSEYVKPALQEEVSSTQEIYAGSGKRGLPDMGILVSGCQSDQTSADANPTGNPAHAYGALSNAIQTILAEHDGPIPNRQLVMKARQILSKQGFAQRPGLYCTDRLANAPFICD

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1004	16	83			0.994512
1095			20	80	0.997017
1098	20	80			0.997017
1179	80		20		0.997017
1182			33	66	0.99834
1303	66	16			0.988813
1328	83	16			0.994512
1436	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain