SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene29500

Length: 1314 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene29500

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	E-beta farnesene synthase n=1 Tax=Pinus sylvestris RepID=D7PCH9_PINSY	-	-	88%
FL-Next	tr=E-beta farnesene synthase; Pinus sylvestris (Scots pine).	-	-	94%
Blast2go	e-alpha-bisabolene synthase	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Terpene synthase, metal-binding domain	IPR005630	-	0.0	75%
Blast2go	Terpenoid synthase	IPR008949	-	0.0	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D7PCH9

Fln msg: your sequence is shorter than subject: 327 - 811

Fln protein: RRDLGCHSINQKEMKHVTTWFKHSEFPLLPFV*PWLSLSFFIVAAGTYEPQYAKCRFLFSKLACLNTVLDDMYDTYGTLDELKLFTEAVRRWDL*LTESLPDYMKLCYKIFYEIVHEVVREAEKLQGRELLSFFRKGWEEYLLGYYEEAEWLASEYVPSLEEYIKNGIISIGQRMLLVSGVLLMEGQILSQEALEKLDYPGRRVLTELNCIITRLADDIHTYKAEKARGELASSIECYMKEHPGSTEEVAVNYMYSLLEPAVKELTSEFLKPDDTSDVDIPFQCKKMLMEETRVTMVIFKEGDGFGISKTKIKDYIKECLIEPLPL*

Protein Length: 328

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTAATCAAAAAGAGATGAAGCATGTCACTACCTGGTTTAAACATTCGGAGTTCCCTTTATTACCCTTCGTGTGACCTTGGCTGTCACTCAGCTTCTTCATAGTAGCGGCTGGCACGTATGAGCCCCAATATGCCAAATGCAGATTCCTCTTTTCAAAACTAGCCTGCTTGAATACTGTTCTGGATGATATGTATGATACATATGGAACCCTTGATGAATTGAAGCTATTCACTGAGGCTGTCAGAAGATGGGACCTCTAGTTGACAGAAAGCCTTCCAGACTATATGAAACTCTGCTACAAAATCTTTTACGAAATTGTTCACGAAGTGGTTCGGGAGGCAGAGAAGTTACAGGGGCGCGAATTGCTTAGCTTTTTCAGAAAGGGATGGGAGGAATATCTTCTGGGGTATTATGAAGAAGCTGAATGGTTAGCATCTGAGTACGTGCCAAGCTTGGAGGAGTACATAAAGAATGGGATCATTTCCATCGGCCAACGTATGCTTCTGGTGAGTGGAGTGTTATTGATGGAGGGGCAAATCCTTTCGCAAGAGGCATTGGAGAAATTAGATTATCCAGGAAGGCGTGTTCTCACAGAGCTCAACTGCATCATTACCCGCCTGGCCGATGACATACATACATATAAGGCTGAGAAGGCTCGTGGAGAATTGGCGTCCAGTATTGAATGTTATATGAAAGAACATCCTGGAAGTACAGAGGAAGTGGCTGTGAATTACATGTACAGCCTTCTGGAGCCGGCGGTGAAGGAGCTCACCTCGGAGTTTCTGAAACCCGACGACACATCGGATGTCGACATCCCGTTTCAGTGCAAGAAAATGCTAATGGAAGAGACTCGAGTGACGATGGTGATATTCAAGGAAGGAGACGGTTTTGGCATTTCTAAAACAAAAATCAAGGACTACATCAAAGAGTGTCTAATTGAACCACTGCCACTGTAA___CTCATATATATGGTCCTTCCTGCCGTGATGTGACTTTGAGTCTGAGACCTGCCTTCCAGATGAAGATGTGCATACATCAGCTGATCGAATTGTTTCAGCCTGAGCTTTCACGGAGTGACGCAGACGTTCAATGGAATTAAGATATATTGATTGAACGAGGAGGCTTGGAATTTAGAATCTCGGCATGTTTATTTTTTGATAGCGGTTTTTTtAaTACGCGATCATTTTATTAATTAAAAAAATTGATCGCATAGTCCAAATCAGGTTACACACCTACCAATATGGTAGTGGGAAGGTGTATTTTAAAGGTGTATTTTAGAATAAAATAATAAG

Fln Alignment:

sp_v1.1_unigene29500___SINQKEMKHVTTWFKHSEFPLLPFV*PWLSLSFFIVAAGTYEPQYAKCRFLFSKLACLNTVLDDMYDTYGTLDELKLFTEAVRRWDL*LTESLPDYMKLCYKIFYEIVHEVVREAEKLQGRELLSFFRKXXXXXXXXXXXXXXXXXSEYVPSLEEYIKNGIISIGQRMLLVSGVLLMEGQILSQEALEKLDYPGRRVLTELNCIITRLADDIHTYKAEKARGELASSIECYMKEHPGSTEEVAVNYMYSLLEPAVKELTSEFLKPDDTSDVDIPFQCKKMLMEETRVTMVIFKEGDGFGISKTKIKDYIK
D7PCH9_______________AIHQKEMKNVTSWFKHSEFPLLPFGRERPVECFFLVAAGTYEPQYAKCRFLFSKVACLNTVLDDMYDTYGTLDELKLFTEAVRRWDLSLTESLPDYMKLCYKIFYEIVHEVVREAEKLQGRELLSFFRKGWEEYLLGYYEEAEWLASEYVPSLEEYIRNGIISIGQRILLVSGVLLMEGQILSQEALEKLDYPGRRVLTELNCIITRLADDIHTYKAEKARGELASSIECYMKEHPGSTEEVAVNYMYSLLEPAVKELTWEFLKPDDTSDVDIPFQCKKMLMEETRVTMVIFKEGDGFGISKTKIKDYIK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
993	85		14		0.993533
1009	28			71	1.0
1017			14	85	0.993533
1031	42			57	1.0
1034		14	85		0.993533
1039	14		85		0.993533
1072	85			14	0.993533
1090		16	83		0.994512
1126	25			75	0.996473
1151			66	33	0.997452
1169		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain